View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16422_low_7 (Length: 476)
Name: NF16422_low_7
Description: NF16422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16422_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 179 - 440
Target Start/End: Original strand, 21269628 - 21269889
Alignment:
| Q |
179 |
ggggtggagatagtaataacaatgaaggaggaggtgaagttaagataatggagtatatggttcaacaacccttcggttttggttatggaaatgtaaatgt |
278 |
Q |
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| T |
21269628 |
ggggtggagatagtaataacaatgaaggaggaggtgaagttcagataatggagtatatggttcaacaaccctttggttttggttatggaaatgtaaatgt |
21269727 |
T |
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| Q |
279 |
tgaggggtataatgctgcacaagtttaccaagagatgttaaatattcatatgcaaacacaaccaccacaaatgtttagtgatgagaatcctaatgcttgc |
378 |
Q |
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| T |
21269728 |
tgaagggtataatgctgcacaagtttaccaagagatgttaaatattcatatgcaaacacaaccaccacaaatgtttagtgatgagaatccaaatgcttgc |
21269827 |
T |
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| Q |
379 |
attgtcatgtgatgtttgtatgagttgtcactatgtcagtagttaatttcattcaattcaac |
440 |
Q |
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| T |
21269828 |
attgtcatgtgatgtgtgtatgagttgtcactatgtcagtagttaatttcattcaattcaac |
21269889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 21269450 - 21269561
Alignment:
| Q |
1 |
aaagagaaagataatgtgactgtgaagggtgcaatggatgtgaaaaagctagttgagaatttatcagagaagcttaagagaaaggttgaggtagttcaac |
100 |
Q |
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| T |
21269450 |
aaagagaaagataatgtgactgtgaagggtacaatggatgtgaaaaagctagtagagaatttatcacagaagctaaagagaaaggttgaggtagttcaac |
21269549 |
T |
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| Q |
101 |
caaagaaagaca |
112 |
Q |
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| T |
21269550 |
caaagaaagaca |
21269561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 377
Target Start/End: Complemental strand, 40787103 - 40787067
Alignment:
| Q |
341 |
caccacaaatgtttagtgatgagaatcctaatgcttg |
377 |
Q |
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| T |
40787103 |
caccacaaatgtttagtgatgaaaatcctaatgcttg |
40787067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 390
Target Start/End: Complemental strand, 45385824 - 45385773
Alignment:
| Q |
339 |
accaccacaaatgtttagtgatgagaatcctaatgcttgcattgtcatgtga |
390 |
Q |
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| T |
45385824 |
accaccacaaatgttcagtgatgagaacccaaatgcttgctgtgtcatgtga |
45385773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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