View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16422_low_8 (Length: 462)
Name: NF16422_low_8
Description: NF16422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16422_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 20 - 445
Target Start/End: Original strand, 35203503 - 35203928
Alignment:
| Q |
20 |
aatataccaaaaatggtgggatcccttccagaactctacgtatgcaggagctttaacgataactacaatagtaacggtgctcaaatttctaaatttggca |
119 |
Q |
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| T |
35203503 |
aatataccaaaaatggtgggatcccttcctgaactctacgtatgcgggagctttaacgataactacaatagtaatggtgctcaaatttctaaatttggca |
35203602 |
T |
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| Q |
120 |
tatggtaatttcaaatctcaatttgtttctagatactatatggtggagcttcctctgctccatctgctcaacatcaatttctgcagcttcctagacacca |
219 |
Q |
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| T |
35203603 |
tatggtaatttcaaatctcaatttgtttctagatactatatggtggagcttcctctgctccatctgctcaacatcaatttctgcagcttcctagacacca |
35203702 |
T |
|
| Q |
220 |
acaaccagatacattgcttgctggtaaagatcaattttctttccatagtcagagccaatatcttacctcgggtgcaatacaccatgtaacacctgatttc |
319 |
Q |
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| T |
35203703 |
acaaccagatacattgcttgctggtaaagatcaattttctttccatagtcagagccaatatcttacctcgggtgcaatacaccatgtaacacctgatttc |
35203802 |
T |
|
| Q |
320 |
atagtctaaagcctcatatcataacaatctcatacttgtttcctcaatcaccaaaaatcttatttactcatcacgtcatctgcatttaagaatcaaaatc |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
35203803 |
atagtctaaagcctcatatcataacaatctcatacttgtttcctcaatcaccaaaaatcttgtttactcatcacttcatctgcatttaagaatcaaaatc |
35203902 |
T |
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| Q |
420 |
cacaatatcattaaccttaccttaac |
445 |
Q |
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| T |
35203903 |
cacaatatcattaaccttaccttaac |
35203928 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 829506 - 829461
Alignment:
| Q |
29 |
aaaatggtgggatcccttccagaactctacgtatgcaggagcttta |
74 |
Q |
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| T |
829506 |
aaaatggtgggaccccttcccgaaccctgcgtatgcaggagcttta |
829461 |
T |
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