View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16422_low_9 (Length: 442)
Name: NF16422_low_9
Description: NF16422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16422_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 24)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 20046137 - 20046566
Alignment:
| Q |
1 |
catcgataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaaattgtttgttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20046137 |
catcgataaaggtagtgaaattgaacacgaagccttccttactacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaaattgtttgttt |
20046236 |
T |
|
| Q |
101 |
tctattgctattaatcttgctagaggaaatccaattgctttggcacctgctgtcttggctagcatatataaggatttaagtttatttaagaaaacaatta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
20046237 |
tctattgctattaatcttgctagaggaaatccaattgctttggcacctgctgttttgggtagcatatataaggatttaagtttatttaagaacacaatta |
20046336 |
T |
|
| Q |
201 |
ttgatctgttaaaatatccagttggtggtggtgatagatttcctgttgaatttactattctatcacccttttatttggttcaagtttgggtgtgggagag |
300 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20046337 |
ttgatctgttaaaatatccggt---tggtggtgatagatttcctgttgaatttactattctatcacccttttatttggttcaagtttgggtgtgggagag |
20046433 |
T |
|
| Q |
301 |
gttcgcaaaattacaaccacaacccatgttgatcaatcccagcgacactttattgtttaggtggcataaggttcaggcattgaaaattgataatgttaag |
400 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
20046434 |
gttcgcaaaattaccaccacaacccatgttgatcaatcccagcgaccctttattgtttaggtggcataaggttcacgcattgaaaattgataatgttaag |
20046533 |
T |
|
| Q |
401 |
ttggcattagactcaactgtcgatgatattctt |
433 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
20046534 |
ttggcattagactcaactgtcgatgattttctt |
20046566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 5 - 433
Target Start/End: Complemental strand, 20016301 - 20015873
Alignment:
| Q |
5 |
gataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaa---tatggtgaaaaattgtttgtttt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||| ||||||||| | | ||||||| |||||||||| |
|
|
| T |
20016301 |
gataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttccgtgaaaagttgtttgtttc |
20016202 |
T |
|
| Q |
102 |
ctattgctattaatcttgctagaggaaatccaattgctttggcacctgctgtcttggctagcatatataaggatttaagtttatttaagaaaacaattat |
201 |
Q |
| |
|
| ||||||||| ||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||| | |
|
|
| T |
20016201 |
cgattgctattcatcttgctagacgaaatcctattgctttggcaccagctgtcttggctagcatatataaagatttaagtttgtttaagaaaacaattgt |
20016102 |
T |
|
| Q |
202 |
tgatctgttaaaatatccagttggtggtggtgatagatttcctgttgaatttactattctatcacccttttatttggttcaagtttgggtgtgggagagg |
301 |
Q |
| |
|
|||| ||| |||||||| || ||||||||||| | |||| | ||| |||| ||| ||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
20016101 |
tgatttgtcaaaatatc---atgtgggtggtgataggtatcctttagaagttacacttcaatcacccatttatttggttcaaatttgggtgtgggagagg |
20016005 |
T |
|
| Q |
302 |
ttcgcaaaattacaaccacaacccatgttgatcaatcccagcgacactttattgtttaggtggcataaggttcaggcattgaaaattgataatgttaagt |
401 |
Q |
| |
|
||| || |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||| | |
|
|
| T |
20016004 |
ttcaaaattttacaaccacaacccatgttgatcaatcatgaagaccctttattgtttaggtggcataaggttcaggctttgaaaattgacaatgttatgg |
20015905 |
T |
|
| Q |
402 |
tggcattagactcaactgtcgatgatattctt |
433 |
Q |
| |
|
|||||||||||||| || | |||||| ||||| |
|
|
| T |
20015904 |
tggcattagactcagctattgatgattttctt |
20015873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 5 - 433
Target Start/End: Original strand, 26647022 - 26647447
Alignment:
| Q |
5 |
gataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaaattgtttgttttcta |
104 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||| |||||||||||||| ||| ||||||||||||| |||| ||||||||| |||||||||| ||| |
|
|
| T |
26647022 |
gataaaggtagtgaaattgaacatgaagcattcctttctacttggttgtcagtttatgtttttcctcatctaaatttggtgaaaagttgtttgtttccta |
26647121 |
T |
|
| Q |
105 |
ttgctattaatcttgctagaggaaatccaattgctttggcacctgctgtcttggctagcatatataaggatttaagtttatttaagaaaacaattattga |
204 |
Q |
| |
|
||||| || ||||||||||||| |||||||||||||||||||| ||||| || |||||| ||||||||||||||||||| |||||||||||| || |||| |
|
|
| T |
26647122 |
ttgctgttcatcttgctagagggaatccaattgctttggcaccggctgttttagctagcttatataaggatttaagtttgtttaagaaaacacttgttga |
26647221 |
T |
|
| Q |
205 |
tctgttaaaatatccagttggtggtggtgatagatttcctgttgaatttactattctatcacccttttatttggttcaagtttgggtgtgggagaggttc |
304 |
Q |
| |
|
| || |||| | | || |||||||||||||| |||| | ||| ||||| ||| |||||||||||| ||||||||| ||||||||||||| |||||| |
|
|
| T |
26647222 |
tttgaaaaaaatttc---tgatggtggtgatagatatcctttggaagttactcttcaatcacccttttacttggttcaaatttgggtgtgggaaaggttc |
26647318 |
T |
|
| Q |
305 |
gcaaaattacaaccacaacccatgttgatcaatcccagcgacactttattgtttaggtggcataaggttcaggcattgaaaattgataatgttaagttgg |
404 |
Q |
| |
|
||| |||||||||||||||| |||||||| | | ||| |||| ||||||||||||||||||||| || ||||||||||| | |||||||| || |
|
|
| T |
26647319 |
aaaaatttacaaccacaacccaatttgatcaaccaaggagaccctttgttgtttaggtggcataaggttaagatcttgaaaattgacagtgttaagtggg |
26647418 |
T |
|
| Q |
405 |
cattagactcaactgtcgatgatattctt |
433 |
Q |
| |
|
|| |||| || |||| |||||| ||||| |
|
|
| T |
26647419 |
cactagattcggctgttgatgattttctt |
26647447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 5 - 414
Target Start/End: Complemental strand, 20036703 - 20036294
Alignment:
| Q |
5 |
gataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaa---tatggtgaaaaattgtttgtttt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||| | ||||||||| || ||||||| |
|
|
| T |
20036703 |
gataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcactttttgtttttcctcataaaaactatttggtgaaaagttctttgtttc |
20036604 |
T |
|
| Q |
102 |
ctattgctattaatcttgctagaggaaatccaattgctttggcacctgctgtcttggctagcatatataaggatttaagtttatttaagaaaacaattat |
201 |
Q |
| |
|
|||||||| | |||||||||||||||||| |||||||| ||||||||||| || ||||| ||||||||||||||| ||| ||||||||||||||| | |
|
|
| T |
20036603 |
ctattgctgtatatcttgctagaggaaatcgtattgctttagcacctgctgttttagctagtctatataaggatttaactttgtttaagaaaacaattgt |
20036504 |
T |
|
| Q |
202 |
tgatctgttaaaatatccagttggtggtggtgatagatttcctgttgaatttactattctatcacccttttatttggttcaagtttgggtgtgggagagg |
301 |
Q |
| |
|
|||| ||| ||||| || || ||||||||||||| ||||| | ||| ||||| || |||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
20036503 |
tgatttgtcaaaatgtc---atgttggtggtgatagacttcctttagaagttactcttgaatcacccttttacttggttcaaatttgggtgtgggagagg |
20036407 |
T |
|
| Q |
302 |
ttcgcaaaattacaaccacaacccatgttgatcaatcccagcgacactttattgtttaggtggcataaggttcaggcattgaaaattgataatgttaagt |
401 |
Q |
| |
|
||| ||| ||||||||||||||||||||| | || | | ||| |||| ||||||||||||||||||||| || | |||| ||||| ||||||| | |
|
|
| T |
20036406 |
ttcaaaaatttacaaccacaacccatgttgttgaaccatggggacccttttttgtttaggtggcataaggttaagcccttgatgattgacaatgttagga |
20036307 |
T |
|
| Q |
402 |
tggcattagactc |
414 |
Q |
| |
|
||||||||||||| |
|
|
| T |
20036306 |
tggcattagactc |
20036294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 7 - 373
Target Start/End: Original strand, 19812300 - 19812669
Alignment:
| Q |
7 |
taaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaaattgtttgttttctatt |
106 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| || |||||||||| | ||||||| | || |
|
|
| T |
19812300 |
taaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcaatttttgtttttcctcataaatatttggtgaaaaagtctttgtttccgatc |
19812399 |
T |
|
| Q |
107 |
gctattaatcttgctagaggaaatccaattgctttggcacctgctgtcttggctagcatatataaggatttaagtttatttaagaaaacaattattgatc |
206 |
Q |
| |
|
|||||| |||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| |
|
|
| T |
19812400 |
gctattcttcttgctagagggtatcctattgctttggcaccagctgtcttggctagcatatataaagatttaagtttgtttaagaaaacaattgttgatt |
19812499 |
T |
|
| Q |
207 |
tgttaaaatatccagttggtggtggtgatagatttcctgttgaatttactattctatcacccttttatttggttcaagtttgggtgtgggagaggttcgc |
306 |
Q |
| |
|
||| ||||||||| || |||||||||||||||||| | || ||||| ||| |||||||||||| ||||||||| ||||||| |||||||||||| |
|
|
| T |
19812500 |
tgtcaaaatatcc---tgttggtggtgatagatttcccttggagattactcttcaatcacccttttacttggttcaaatttgggtttgggagaggttcaa |
19812596 |
T |
|
| Q |
307 |
aaaattacaaccacaac------ccatgttgatcaatcccagcgacactttattgtttaggtggcataaggtt |
373 |
Q |
| |
|
||| || |||||||||| | ||||||||||| | ||||| |||| ||||||||||||||||||||| |
|
|
| T |
19812597 |
aaatttgcaaccacaacaacaaactatgttgatcaaccatggcgacccttttttgtttaggtggcataaggtt |
19812669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 5 - 414
Target Start/End: Original strand, 19849008 - 19849423
Alignment:
| Q |
5 |
gataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaa---atatggtgaaaaattgtttgtttt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||| || ||||||||| || ||||||| |
|
|
| T |
19849008 |
gataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcactttttgtttttcctcataaaaactatttggtgaaaagttctttgtttc |
19849107 |
T |
|
| Q |
102 |
ctattgctattaatcttgctagaggaaatccaattgctttggcacctgctgtcttggctagcatatataaggatttaagtttatttaagaaaacaattat |
201 |
Q |
| |
|
|||||||| | |||||||||||||||||| |||||||| ||||||||||| || ||||| ||||||||||||||| ||| |||||||||||||| | |
|
|
| T |
19849108 |
ctattgctgtatatcttgctagaggaaatcgtattgctttagcacctgctgttttagctagtctatataaggatttaactttgtttaagaaaacaatcac |
19849207 |
T |
|
| Q |
202 |
tgatctgttaaaatatccagttggtggtggtgatagatttcctgttgaatttactattctatcacccttttatttggttcaagtttgggtgtgggagagg |
301 |
Q |
| |
|
|||| ||| ||||| || || |||||||||||||||||| | || ||||| || |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19849208 |
tgatttgtcaaaatgtc---atgttggtggtgatagatttcccttggagattactcttaaatcacccttttatttggttcaaatttgggtgtgggagagg |
19849304 |
T |
|
| Q |
302 |
ttcgcaaaatt------acaaccacaacccatgttgatcaatcccagcgacactttattgtttaggtggcataaggttcaggcattgaaaattgataatg |
395 |
Q |
| |
|
||| ||| || ||| |||||| ||||||||| ||| | | || ||||||||||||| ||||||||||||||||| ||||||||||| |||| |
|
|
| T |
19849305 |
ttcaaaaatttgcaaccacagccacaaaccatgttgaccaaccatggggatcctttattgtttagatggcataaggttcaggccttgaaaattgacaatg |
19849404 |
T |
|
| Q |
396 |
ttaagttggcattagactc |
414 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
19849405 |
ttaggttggcattagactc |
19849423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 7 - 414
Target Start/End: Original strand, 19818577 - 19818987
Alignment:
| Q |
7 |
taaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaaattgtttgttttctatt |
106 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| ||| |||||||||||| | ||||| || || |
|
|
| T |
19818577 |
taaaggtaccgaaattgaacatgaagcttttcttgctacttggttatcaatttttgtttttcctcataagaatttggtgaaaaattatctgtttcctgtt |
19818676 |
T |
|
| Q |
107 |
gctattaatcttgctagaggaaatccaattgctttggcacctgctgtcttggctagcatatataaggatttaagtttatttaagaaaacaattattgatc |
206 |
Q |
| |
|
||| |||||||||||||||| ||||| |||||||||||||| ||||| ||||||| ||| ||||| ||||||||||| |||||||||| ||| ||||| |
|
|
| T |
19818677 |
gctgttaatcttgctagagggaatcctattgctttggcaccggctgttttggctaacatttataaagatttaagtttgtttaagaaaaaaatagttgatt |
19818776 |
T |
|
| Q |
207 |
tgttaaaatatccagttggtggtggtgatagatttcctgttgaatttactattctatcacccttttatttggttcaagtttgggtgtgggagaggttcgc |
306 |
Q |
| |
|
||| ||||||| | || ||||||||||||||||||| | ||| ||||| ||| |||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
19818777 |
tgtcaaaatattc---tgttggtggtgatagatttcctttagaacttactcttcaatcacccttttatttggttcaaatatgggtgtgggagaggttcaa |
19818873 |
T |
|
| Q |
307 |
aaaattacaa------ccacaacccatgttgatcaatcccagcgacactttattgtttaggtggcataaggttcaggcattgaaaattgataatgttaag |
400 |
Q |
| |
|
||| | ||| |||||| |||||||||| || | | ||| |||| ||||||||||||||| | |||||||| ||| ||||||| ||||||| | |
|
|
| T |
19818874 |
aaatatgcaaccactgccacaaaccatgttgataaaccatggagacccttttttgtttaggtggcatgatgttcaggccttggaaattgacaatgttagg |
19818973 |
T |
|
| Q |
401 |
ttggcattagactc |
414 |
Q |
| |
|
||||||||||||| |
|
|
| T |
19818974 |
atggcattagactc |
19818987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 5 - 414
Target Start/End: Original strand, 19956102 - 19956511
Alignment:
| Q |
5 |
gataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaatatg---gtgaaaaattgtttgtttt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||| || ||||||| || ||||||| |
|
|
| T |
19956102 |
gataaaggtagtgaaattgaacatgaagcttttcttgctacttggttgtcaatttttgttttccctcataaatattcttccgtgaaaagttatttgtttc |
19956201 |
T |
|
| Q |
102 |
ctattgctattaatcttgctagaggaaatccaattgctttggcacctgctgtcttggctagcatatataaggatttaagtttatttaagaaaacaattat |
201 |
Q |
| |
|
|||||| | || ||||||||||||||||||| |||||||||||||| ||||| || |||||||||||||||||||||| ||| || ||||||| || | |
|
|
| T |
19956202 |
ctattgttgttcatcttgctagaggaaatcctattgctttggcaccagctgttttagctagcatatataaggatttaactttgttaaagaaaaaaacagt |
19956301 |
T |
|
| Q |
202 |
tgatctgttaaaatatccagttggtggtggtgatagatttcctgttgaatttactattctatcacccttttatttggttcaagtttgggtgtgggagagg |
301 |
Q |
| |
|
|||| ||| ||||||||| || ||||||||||||| |||| ||| ||||| ||| |||||||||||| ||||||||| ||||||||||||| ||| |
|
|
| T |
19956302 |
tgatttgtcaaaatatcc---tgtgggtggtgatagatatccttcagaacttactcttcaatcacccttttacttggttcaaatttgggtgtgggaaagg |
19956398 |
T |
|
| Q |
302 |
ttcgcaaaattacaaccacaacccatgttgatcaatcccagcgacactttattgtttaggtggcataaggttcaggcattgaaaattgataatgttaagt |
401 |
Q |
| |
|
||| ||| ||||| ||||||||||||||| | || | || || |||| ||||||||||||||||||||| || | |||| | |||| ||||||| | |
|
|
| T |
19956399 |
ttcaaaaatttacagccacaacccatgttgttgaaccataggaacccttttttgtttaggtggcataaggttaagcccttgatagttgacaatgttagga |
19956498 |
T |
|
| Q |
402 |
tggcattagactc |
414 |
Q |
| |
|
||||||||||||| |
|
|
| T |
19956499 |
tggcattagactc |
19956511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 9 - 337
Target Start/End: Original strand, 26653174 - 26653499
Alignment:
| Q |
9 |
aaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaaattgtttgttttctattgc |
108 |
Q |
| |
|
|||||||||||||||||||||| || || ||| | |||||||||||||||||||||||||||||| | | | ||||||| || ||||||||||||||| |
|
|
| T |
26653174 |
aaggtagtgaaattgaacatgatgcattccttgcagcttggttgtcaatttttgtttttcctcatatagaattagtgaaaagttctttgttttctattgc |
26653273 |
T |
|
| Q |
109 |
tattaatcttgctagaggaaatccaattgctttggcacctgctgtcttggctagcatatataaggatttaagtttatttaagaaaacaattattgatctg |
208 |
Q |
| |
|
| || ||||||||||||||||||| |||||||||||||| ||||| || ||||| ||||||||||| || | ||| ||||||||||||||| ||| | || |
|
|
| T |
26653274 |
tgttcatcttgctagaggaaatcctattgctttggcaccagctgttttagctagtatatataaggacttgactttgtttaagaaaacaattgttggtttg |
26653373 |
T |
|
| Q |
209 |
ttaaaatatccagttggtggtggtgatagatttcctgttgaatttactattctatcacccttttatttggttcaagtttgggtgtgggagaggttcgcaa |
308 |
Q |
| |
|
| ||||||| || ||||||||||||||||||| | ||| ||| | | | |||||||||||| ||||||||| |||||||||||||||||||| ||| |
|
|
| T |
26653374 |
tcaaaatat---tatgttggtggtgatagatttcctttggaagttaatctacgatcacccttttacttggttcaaatttgggtgtgggagaggttcacaa |
26653470 |
T |
|
| Q |
309 |
aattacaaccacaacccatgttgatcaat |
337 |
Q |
| |
|
| || ||||||||||||| |||||||||| |
|
|
| T |
26653471 |
atttgcaaccacaacccaagttgatcaat |
26653499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 5 - 373
Target Start/End: Original strand, 19951142 - 19951507
Alignment:
| Q |
5 |
gataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaaattgtttgttttcta |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||| |||| || |||||| | || || | | ||| |
|
|
| T |
19951142 |
gataaaggtagtgaaattgaacatgaagccttccttgttacttggttgtcactttttgtttttcctaataataaattggtgaggagttattcgctaccta |
19951241 |
T |
|
| Q |
105 |
ttgctattaatcttgctagaggaaatccaattgctttggcacctgctgtcttggctagcatatataaggatttaagtttatttaagaaaacaattattga |
204 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||| || ||||| || |||||||||||||||||||||| ||| ||||| ||| ||||| |||| |
|
|
| T |
19951242 |
ttgctattcatcttgctagaggaaatcctattgctttggctccagctgttttagctagcatatataaggatttaactttgtttaaaaaagcaattgttga |
19951341 |
T |
|
| Q |
205 |
tctgttaaaatatccagttggtggtggtgatagatttcctgttgaatttactattctatcacccttttatttggttcaagtttgggtgtgggagaggttc |
304 |
Q |
| |
|
| ||| |||||||| || ||||||||||||| |||| | ||| ||||| ||| |||||||||||| ||||||||| ||||| | ||||||||||| |
|
|
| T |
19951342 |
tttgtcaaaatatc---atgtgggtggtgatagatatcctttagaacttactcttcaatcacccttttacttggttcaaatttggatttgggagaggttt |
19951438 |
T |
|
| Q |
305 |
gcaaaattacaaccacaacccatgttgatcaatcccagcgacactttattgtttaggtggcataaggtt |
373 |
Q |
| |
|
||| |||||||||||||||||| ||| || | | ||| |||| ||||||||||||||||||||| |
|
|
| T |
19951439 |
aaaaatttacaaccacaacccatgccgataaaccatggagacccttttttgtttaggtggcataaggtt |
19951507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 19838407 - 19838820
Alignment:
| Q |
1 |
catcgataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaa---tatggtgaaaaattgtttg |
97 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || || | | ||||||| | |||| |
|
|
| T |
19838407 |
catcgataaaggtagcgaaattgaacatgaagcttttctagctacttggttgtcaatttttgtttttcctaatcaacactcttgcgtgaaaagctttttg |
19838506 |
T |
|
| Q |
98 |
ttttctattgctattaatcttgctagaggaaatccaattgctttggcacctgctgtcttggctagcatatataaggatttaagtttatttaagaaaacaa |
197 |
Q |
| |
|
||| | |||| | || ||||||||||||||||| | |||||||||||||| ||||| || |||||||||||||| ||||||| ||| || ||||||| || |
|
|
| T |
19838507 |
tttccaattgttgttcatcttgctagaggaaattctattgctttggcaccagctgttttagctagcatatataatgatttaactttgttaaagaaaaaaa |
19838606 |
T |
|
| Q |
198 |
ttattgatctgttaaaatatccagttggtggtggtgatagatttcctgttgaatttactattctatcacccttttatttggttcaagtttgggtgtggga |
297 |
Q |
| |
|
||||| ||| |||| |||| |||||| ||| ||| || |||| | ||| ||||| ||| |||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
19838607 |
cagttgatttgtcaaaacatcctgttggttgtg---atacatatcctttagaagttactcttcaatcacccttttacttggttcaaatttgggtgtggga |
19838703 |
T |
|
| Q |
298 |
gaggttcgcaaaattacaaccacaacccatgttgatcaatcccagcgacactttattgtttaggtggcataaggttcaggcattgaaaattgataatgtt |
397 |
Q |
| |
|
||||||| ||| |||||||||||||| |||||| | || | | ||| |||| ||||||||||||||||| ||| |||| |||| |||||| ||| || |
|
|
| T |
19838704 |
gaggttcaaaaatttacaaccacaaccaatgttgttgaaccagggggacccttttttgtttaggtggcataaagttaaggccttgataattgacaatatt |
19838803 |
T |
|
| Q |
398 |
aagttggcattagactc |
414 |
Q |
| |
|
| | |||| |||||||| |
|
|
| T |
19838804 |
aggatggctttagactc |
19838820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 19853532 - 19853733
Alignment:
| Q |
7 |
taaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaa---tatggtgaaaaattgtttgttttct |
103 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||| | | ||| ||||||| | ||||||| || |
|
|
| T |
19853532 |
taaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtctatttttgtttttcctcatagatactttattgtgaaaagatctttgtttcct |
19853631 |
T |
|
| Q |
104 |
attgctattaatcttgctagaggaaatccaattgctttggcacctgctgtcttggctagcatatataaggatttaagtttatttaagaaaacaattattg |
203 |
Q |
| |
|
||||||||| |||||||||||| ||| | |||||||||||||||||||| ||||||||| ||||||| ||||| ||||| |||||||||| |||| ||| |
|
|
| T |
19853632 |
attgctattcgtcttgctagaggtaatactattgctttggcacctgctgttttggctagcttatataacgatttgagtttgtttaagaaaaaaattgttg |
19853731 |
T |
|
| Q |
204 |
at |
205 |
Q |
| |
|
|| |
|
|
| T |
19853732 |
at |
19853733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 19858086 - 19858281
Alignment:
| Q |
1 |
catcgataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaa---tatggtgaaaaattgtttg |
97 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||| ||| | | || ||||||| | |||| |
|
|
| T |
19858086 |
catcgataaaggtagtgaaattgagcatgaagcatttcttgctacttggttgtcaatttttgtttttcctaatagatactttaatgtgaaaagatctttg |
19858185 |
T |
|
| Q |
98 |
ttttctattgctattaatcttgctagaggaaatccaattgctttggcacctgctgtcttggctagcatatataaggatttaagtttatttaagaaa |
193 |
Q |
| |
|
||| ||||||||||| |||||||||||||||| | || ||||||||||||||||| ||||||||| ||||||| ||||| ||||| ||||||||| |
|
|
| T |
19858186 |
tttcctattgctattggtcttgctagaggaaatactatcgctttggcacctgctgttttggctagcttatataacgatttgagtttgtttaagaaa |
19858281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 19943734 - 19943925
Alignment:
| Q |
1 |
catcgataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcata---aaaatatggtgaaaaattgtttg |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||| | ||| ||||||||| | | || |
|
|
| T |
19943734 |
catcgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcaa--tttgtttttcctcatagatacaatgtggtgaaaagt--tctg |
19943829 |
T |
|
| Q |
98 |
ttttctattgctattaatcttgctagaggaaatccaattgctttggcacctgctgtcttggctagcatatataaggatttaagtttatttaagaaa |
193 |
Q |
| |
|
||| |||||||| || ||||||||||||| | ||| || ||||||||||||||||| ||||||||| ||||||||||||| ||||| ||||||||| |
|
|
| T |
19943830 |
tttcctattgctgttcatcttgctagagggattcctatggctttggcacctgctgttttggctagcttatataaggatttgagtttgtttaagaaa |
19943925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 24840078 - 24839871
Alignment:
| Q |
1 |
catcgataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaa---tatggtgaaaaattgtttg |
97 |
Q |
| |
|
||||||||||||||||||| |||| |||||||| |||||| ||||||||||||||||||||||||| ||||||||| | | | |||||| || |||| |
|
|
| T |
24840078 |
catcgataaaggtagtgaagttgagcatgaagcatttcttgctacttggttgtcaatttttgttttccctcataaatactctctagtgaaatgttctttg |
24839979 |
T |
|
| Q |
98 |
ttttctattgctattaatcttgctagaggaaatccaattgctttggcacctgctgtcttggctagcatatataaggatttaagtttatttaagaaaacaa |
197 |
Q |
| |
|
||| || ||||| || |||| |||||||| ||||| ||| |||||||||||||||| ||||||||| ||||||| |||||||| || |||||||| |||| |
|
|
| T |
24839978 |
tttcctgttgctgttcatctagctagagggaatcctatttctttggcacctgctgttttggctagcttatataacgatttaaggttgtttaagaacacaa |
24839879 |
T |
|
| Q |
198 |
ttattgat |
205 |
Q |
| |
|
|| ||||| |
|
|
| T |
24839878 |
ttgttgat |
24839871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 5 - 336
Target Start/End: Original strand, 19989540 - 19989871
Alignment:
| Q |
5 |
gataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaata---tggtgaaaaattgtttgtttt |
101 |
Q |
| |
|
|||||||||| |||| ||||||||||||| |||||| ||||||||||||||||||||||| |||| |||||| | | ||||| | || ||| ||| |
|
|
| T |
19989540 |
gataaaggtaatgaacttgaacatgaagcatttcttgctacttggttgtcaatttttgttcatccttataaaagtcgtgttgtgaatagttctttctttc |
19989639 |
T |
|
| Q |
102 |
ctattgctattaatcttgctagaggaaatccaattgctttggcacctgctgtcttggctagcatatataaggatttaagtttatttaagaaaacaattat |
201 |
Q |
| |
|
| |||||||| ||||||||||||||||||| ||||| || |||||||| || |||||||| | |||||||||||| ||||| ||||||| | | | | |
|
|
| T |
19989640 |
gtgttgctattcatcttgctagaggaaatcctattgcattagcacctgcagttttggctagtttgtataaggatttaggtttacttaagaacatattagt |
19989739 |
T |
|
| Q |
202 |
tgatctgttaaaatatccagttggtggtggtgatagatttcctgttgaatttactattctatcacccttttatttggttcaagtttgggtgtgggagagg |
301 |
Q |
| |
|
| || ||| |||| ||| |||||||||| ||||| |||| | || || | ||| |||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
19989740 |
taatttgtcaaaacttcctgttggtggtg---atagacttcccatggaggctattcttcaatcacccttttacttggttcaagtttgggtttgggagagg |
19989836 |
T |
|
| Q |
302 |
ttcgcaaaattacaaccacaacccatgttgatcaa |
336 |
Q |
| |
|
||| ||| |||||||||||||||||| ||||||| |
|
|
| T |
19989837 |
ttcaaaaatttacaaccacaacccatgctgatcaa |
19989871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 5 - 303
Target Start/End: Original strand, 30914661 - 30914959
Alignment:
| Q |
5 |
gataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaaattgtttgttttcta |
104 |
Q |
| |
|
||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||| || ||||||||| || ||||||| ||| |
|
|
| T |
30914661 |
gataaagttagtgaaattgaacatgaagcattccttactacttggttgtcaatttttgttttccctcacaaagatttggtgaaaagttttttgtttccta |
30914760 |
T |
|
| Q |
105 |
ttg---ctattaatcttgctagaggaaatccaattgctttggcacctgctgtcttggctagcatatataaggatttaagtttatttaagaaaacaattat |
201 |
Q |
| |
|
||| ||||| ||||||||||||| || |||| || ||||| |||||||||||||| || ||||||||||| |||||||||||||| | |
|
|
| T |
30914761 |
ttgcgcctattcatcttgctagagggaacattgttgcattagcaccaaaaaaattggctagcatatacaaagatttaagtttgtttaagaaaacaatagt |
30914860 |
T |
|
| Q |
202 |
tgatctgttaaaatatccagttggtggtggtgatagatttcctgttgaatttactattctatcacccttttatttggttcaagtttgggtgtgggagagg |
301 |
Q |
| |
|
|| | ||| |||||||| ||| |||||||||||||| |||| | || ||||| ||| ||||||||| | ||||| ||| ||||||| ||||||||| |
|
|
| T |
30914861 |
tggtttgtcaaaatatcaagt---tggtggtgatagatgtcctatggaggttactcttcactcaccctttgacttggtacaaatttgggtttgggagagg |
30914957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 171 - 433
Target Start/End: Original strand, 17114900 - 17115159
Alignment:
| Q |
171 |
aggatttaagtttatttaagaaaacaattattgatctgttaaaatatccagttggtggtggtgatagatttcctgttgaatttactattctatcaccctt |
270 |
Q |
| |
|
||||||| | ||| ||||||||||| ||||||||| ||| |||| |||| ||| ||||| ||||||||||| | ||| || || || | ||||| |
|
|
| T |
17114900 |
aggatttgactttgtttaagaaaactattattgatttgtcaaaaaatcctgtttatggtg---atagatttcctttagaagttgctcgtcgaatgccctt |
17114996 |
T |
|
| Q |
271 |
ttatttggttcaagtttgggtgtgggagaggttcgcaaaattacaaccacaacccatgttgatcaatcccagcgacactttattgtttaggtggcataag |
370 |
Q |
| |
|
||| ||||||||| ||||| |||||||||||||| ||| |||||||||||| ||||||||||||| | | ||| ||||||||||||||||||||| | |
|
|
| T |
17114997 |
ttacttggttcaaatttggatgtgggagaggttcaaaaatttacaaccacaatccatgttgatcaaccatggagaccctttattgtttaggtggcatagg |
17115096 |
T |
|
| Q |
371 |
gttcaggcattgaaaattgataatgttaagttggcattagactcaactgtcgatgatattctt |
433 |
Q |
| |
|
|||||||| |||||||||| ||||||||| | |||||||||| | ||||||||||| ||||| |
|
|
| T |
17115097 |
gttcaggccgtgaaaattgacaatgttaagctagcattagacttagctgtcgatgattttctt |
17115159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 262 - 414
Target Start/End: Original strand, 19858344 - 19858496
Alignment:
| Q |
262 |
atcacccttttatttggttcaagtttgggtgtgggagaggttcgcaaaattacaaccacaacccatgttgatcaatcccagcgacactttattgtttagg |
361 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| ||||| |||||| ||| ||| | |||||||||||||||||||| | | || |||||||||||||| |
|
|
| T |
19858344 |
atcacccttttacttgcttcaagtttgggtttgggaaaggttcaaaaatttagagccacaacccatgttgatcaagcatggagaacctttattgtttagg |
19858443 |
T |
|
| Q |
362 |
tggcataaggttcaggcattgaaaattgataatgttaagttggcattagactc |
414 |
Q |
| |
|
|||||||||||| |||| |||||| |||| ||||||||||||||||||||||| |
|
|
| T |
19858444 |
tggcataaggttaaggccttgaaagttgacaatgttaagttggcattagactc |
19858496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 252 - 413
Target Start/End: Original strand, 19832134 - 19832295
Alignment:
| Q |
252 |
ttactattctatcacccttttatttggttcaagtttgggtgtgggagaggttcgcaaaattacaaccacaacccatgttgatcaatcccagcgacacttt |
351 |
Q |
| |
|
||||| ||| |||||||||||| ||||||||| |||||||||||||||||||| ||| ||||| ||||||||||||||| | || | || | || |
|
|
| T |
19832134 |
ttactcttcaatcacccttttacttggttcaaatttgggtgtgggagaggttcaaaaatttacatccacaacccatgttgttgaacaaaggggaaccatt |
19832233 |
T |
|
| Q |
352 |
attgtttaggtggcataaggttcaggcattgaaaattgataatgttaagttggcattagact |
413 |
Q |
| |
|
||||||||||||||||||||| |||| ||| |||||| ||||||| | |||||||||||| |
|
|
| T |
19832234 |
tttgtttaggtggcataaggttaaggccttggtaattgacaatgttaggatggcattagact |
19832295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 262 - 415
Target Start/End: Complemental strand, 24839820 - 24839667
Alignment:
| Q |
262 |
atcacccttttatttggttcaagtttgggtgtgggagaggttcgcaaaattacaaccacaacccatgttgatcaatcccagcgacactttattgtttagg |
361 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||| |||||| ||| || || |||||||||| |||| |||| | ||| | ||||||| ||| |
|
|
| T |
24839820 |
atcacccttttacctggttcaagtttgggtttgggaaaggttcaaaaatttgcagccacaacccaagttgggcaataatcgagaccatgtattgttgagg |
24839721 |
T |
|
| Q |
362 |
tggcataaggttcaggcattgaaaattgataatgttaagttggcattagactca |
415 |
Q |
| |
|
|||||||| ||| |||| ||||||||||| ||||| | |||||||||||||||| |
|
|
| T |
24839720 |
tggcataatgttaaggccttgaaaattgacaatgtgaggttggcattagactca |
24839667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 53 - 219
Target Start/End: Original strand, 19971677 - 19971846
Alignment:
| Q |
53 |
tcaatttttgtttttcctcataaaaa---tatggtgaaaaattgtttgttttctattgctattaatcttgctagaggaaatccaattgctttggcacctg |
149 |
Q |
| |
|
||||||||||||||| |||||| | | ||| ||||||| || ||||||| ||||||||||| || | | |||||| ||| | |||||||||||||| |
|
|
| T |
19971677 |
tcaatttttgttttttctcatagatactttatagtgaaaagttctttgtttcctattgctattcatttggttagaggcaatactattgctttggcaccaa |
19971776 |
T |
|
| Q |
150 |
ctgtcttggctagcatatataaggatttaagtttatttaagaaaacaattattgatctgttaaaatatcc |
219 |
Q |
| |
|
|||| ||||||||| |||||||||||| || | | ||||||||| |||| ||||| || ||||||||| |
|
|
| T |
19971777 |
ctgttttggctagcttatataaggattgaactctgtttaagaaacaaattgttgatttgaaaaaatatcc |
19971846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 262 - 411
Target Start/End: Original strand, 19943989 - 19944138
Alignment:
| Q |
262 |
atcacccttttatttggttcaagtttgggtgtgggagaggttcgcaaaattacaaccacaacccatgttgatcaatcccagcgacactttattgtttagg |
361 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||| |||||| ||| || || |||||||| | |||||||||| | ||| | ||||||| ||| |
|
|
| T |
19943989 |
atcacccttttacctggttcaagtttgggtttgggaaaggttcaaaaatttgcagccacaaccaaagttgatcaataatggagaccatgtattgttgagg |
19944088 |
T |
|
| Q |
362 |
tggcataaggttcaggcattgaaaattgataatgttaagttggcattaga |
411 |
Q |
| |
|
|||||||| ||| |||| ||||||||||| ||||| |||||||||||| |
|
|
| T |
19944089 |
tggcataatgttaaggccttgaaaattgacaatgtggggttggcattaga |
19944138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 19853766 - 19853840
Alignment:
| Q |
262 |
atcacccttttatttggttcaagtttgggtgtgggagaggttcgcaaaattacaaccacaacccatgttgatcaa |
336 |
Q |
| |
|
|||||||||||| ||||| |||| ||||||||||||||| ||| ||| || || |||||||| | ||||||||| |
|
|
| T |
19853766 |
atcacccttttacttggtacaagcttgggtgtgggagagattcataaatttgcagccacaaccgaagttgatcaa |
19853840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 6397842 - 6397411
Alignment:
| Q |
1 |
catcgataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaaatt--gtttgt |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||| || |||||||| |||||| |||||||||| || ||||| |
|
|
| T |
6397842 |
catcgataaaggtagtgaaattgaacatgaagccttccttgctacctggttgtcaatttgtgcttttcctcctaaaaaaatggtgaaaagttttgtttgc |
6397743 |
T |
|
| Q |
99 |
tttctattgctattaatcttgctagaggaaatccaattgctttggcacctgctgtcttggctagcatatataaggatttaagtttatttaagaaaacaat |
198 |
Q |
| |
|
|||||||| | ||||||||||||||| ||||||||||||||||||||| |||| ||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
6397742 |
tttctattaatgttaatcttgctagagaaaatccaattgctttggcaccatctgttttggctatcatatataaggatttatctttatttaagaaaacaat |
6397643 |
T |
|
| Q |
199 |
tattgatctgttaaaatatccagttggtggtggtgatagatttcctgttgaatttactattctatcacccttttatttggttcaagtttgggtgtgggag |
298 |
Q |
| |
|
||||||| ||| ||||||| ||| ||||| ||||| ||||| ||||||||||||| |||||||||| ||||| |||||||||||||||| |||| || |
|
|
| T |
6397642 |
tattgatttgtcgaaatatc---ttgttggtgatgataaatttcatgttgaatttactcttctatcacctttttacttggttcaagtttgggcgtggaag |
6397546 |
T |
|
| Q |
299 |
aggttcgcaaaattacaaccacaacccatgttgatcaatcccagcgacactttattgtttaggtggcataaggttcaggcattgaaaattgataatgtta |
398 |
Q |
| |
|
|||||| || | || | ||||||| |||||||| | | || ||| ||||||| ||||||||| ||||||||||||| || |||||||| ||| ||| |
|
|
| T |
6397545 |
aggttcacacatttgcgttcacaacctatgttgattacccacatagaccctttattttttaggtggtataaggttcaggcctttaaaattgacaatatta |
6397446 |
T |
|
| Q |
399 |
agttggcattagactcaactgtcgatgatattctt |
433 |
Q |
| |
|
||||||||| |||||||||||||||| || ||||| |
|
|
| T |
6397445 |
agttggcatgagactcaactgtcgataattttctt |
6397411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 6 - 376
Target Start/End: Original strand, 6398280 - 6398650
Alignment:
| Q |
6 |
ataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaaattgtttgttttctat |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||| |||||||| |||||||||||||||| ||||| |||||||||| ||||||||||||||| |
|
|
| T |
6398280 |
ataaaggtagtgaaattgaacatgaagccttccttgctaattggttgttaatttttgtttttcctagtaaaacaatggtgaaaagttgtttgttttctat |
6398379 |
T |
|
| Q |
106 |
tgctattaatcttgctagaggaaatccaattgctttggcacctgctgtcttggctagc--atatataaggatttaagtttatttaag-aaaacaattatt |
202 |
Q |
| |
|
|||| ||||||| ||||||||||||||||| | ||||||||| ||||| || |||||| |||||||||||||||| |||||||||| |||| ||||||| |
|
|
| T |
6398380 |
tgctgttaatctcgctagaggaaatccaatcggtttggcaccagctgttttagctagcatatatataaggatttaactttatttaagaaaaaaaattatt |
6398479 |
T |
|
| Q |
203 |
gatctgttaaaatatccagttggtggtggtgatagatttcctgttgaatttactattctatcacccttttatttggttcaagtttgggtgtgggagaggt |
302 |
Q |
| |
|
||| ||| |||||||| || || || ||||||||||||||||||||||||| | | ||||| ||||| |||||||||||| |||||||||||||| |
|
|
| T |
6398480 |
gatatgtcaaaatatc---atgttgatgatgatagatttcctgttgaatttactctgttgtcacctttttacgtggttcaagtttaggtgtgggagaggt |
6398576 |
T |
|
| Q |
303 |
tcgcaaaattacaaccacaacccatgttgatcaatcccagcgacactttattgtttaggtggcataaggttcag |
376 |
Q |
| |
|
|| |||| || |||||||||| |||||||||||| ||| || |||||||||||| | ||||||||||||| |
|
|
| T |
6398577 |
tcacaaacttgcaaccacaactcatgttgatcaacaacagacactctttattgtttaagaagcataaggttcag |
6398650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 433
Target Start/End: Original strand, 12497241 - 12497651
Alignment:
| Q |
19 |
aattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaaattgtttgttttctattgctattaatctt |
118 |
Q |
| |
|
|||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| ||| ||||||| || || ||||||||||||||||||||||||| |
|
|
| T |
12497241 |
aattgaacatgaagccttccttgctacctggttgtcaatttttgtttttcctcatagaaaaatggtgataagttatttgttttctattgctattaatctt |
12497340 |
T |
|
| Q |
119 |
gctagaggaaatccaattgctttggcacctgctgtcttggctagcatatataaggatttaagtttatttaagaaaacaattattgatctgttaaaatatc |
218 |
Q |
| |
|
|||||| |||||| |||| ||||| | || ||||| |||||||||||| |||| ||||||| ||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
12497341 |
gctagaagaaatcaaattactttgccgccagctgttttggctagcataaataacgatttaactttatttaagaaaacaattattgatctgtcaaaacatc |
12497440 |
T |
|
| Q |
219 |
cagttggtggtggtgatagatttcctgttgaatttactattctatcacccttttatttggttcaagtttgggtgtgggagaggttcgcaaaattacaacc |
318 |
Q |
| |
|
|| ||||| | ||| |||| |||||||||||||| |||| ||||| ||||| |||||||| |||||||| ||||||||| ||||||| || ||||| |
|
|
| T |
12497441 |
---ttattggtgataatatattttctgttgaatttacttttctctcacctttttacttggttcatgtttgggt-tgggagaggctcgcaaacttgcaacc |
12497536 |
T |
|
| Q |
319 |
acaacccatgttgatcaatcccagcgacactttattgtttaggtggcataaggttcaggcattgaaaattgataatgttaagttggcattagactcaact |
418 |
Q |
| |
|
||||| |||||||||||| | || || ||||||||| |||||||||||||||| ||| |||||||||| |||||||||| ||||||| ||||||| |
|
|
| T |
12497537 |
acaactcatgttgatcaaccacatagaacatttattgttgaggtggcataaggttctggccttgaaaattggcaatgttaagtgtgcattaggctcaact |
12497636 |
T |
|
| Q |
419 |
gtcgatgatattctt |
433 |
Q |
| |
|
||| ||||| ||||| |
|
|
| T |
12497637 |
gtcaatgattttctt |
12497651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 433
Target Start/End: Original strand, 12521106 - 12521516
Alignment:
| Q |
19 |
aattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaaattgtttgttttctattgctattaatctt |
118 |
Q |
| |
|
|||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| ||| ||||||| || || ||||||||||||||||||||||||| |
|
|
| T |
12521106 |
aattgaacatgaagccttccttgctacctggttgtcaatttttgtttttcctcatagaaaaatggtgataagttatttgttttctattgctattaatctt |
12521205 |
T |
|
| Q |
119 |
gctagaggaaatccaattgctttggcacctgctgtcttggctagcatatataaggatttaagtttatttaagaaaacaattattgatctgttaaaatatc |
218 |
Q |
| |
|
|||||| |||||| |||| ||||| | || ||||| |||||||||||| |||| ||||||| ||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
12521206 |
gctagaagaaatcaaattactttgccgccagctgttttggctagcataaataacgatttaactttatttaagaaaacaattattgatctgtcaaaacatc |
12521305 |
T |
|
| Q |
219 |
cagttggtggtggtgatagatttcctgttgaatttactattctatcacccttttatttggttcaagtttgggtgtgggagaggttcgcaaaattacaacc |
318 |
Q |
| |
|
|| ||||| | ||| |||| |||||||||||||| |||| ||||| ||||| |||||||| |||||||| ||||||||| ||||||| || ||||| |
|
|
| T |
12521306 |
---ttattggtgataatatattttctgttgaatttacttttctctcacctttttacttggttcatgtttgggt-tgggagaggctcgcaaacttgcaacc |
12521401 |
T |
|
| Q |
319 |
acaacccatgttgatcaatcccagcgacactttattgtttaggtggcataaggttcaggcattgaaaattgataatgttaagttggcattagactcaact |
418 |
Q |
| |
|
||||| |||||||||||| | || || ||||||||| |||||||||||||||| ||| |||||||||| |||||||||| ||||||| ||||||| |
|
|
| T |
12521402 |
acaactcatgttgatcaaccacatagaacatttattgttgaggtggcataaggttctggccttgaaaattggcaatgttaagtgtgcattaggctcaact |
12521501 |
T |
|
| Q |
419 |
gtcgatgatattctt |
433 |
Q |
| |
|
||| ||||| ||||| |
|
|
| T |
12521502 |
gtcaatgattttctt |
12521516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 19 - 433
Target Start/End: Complemental strand, 12580167 - 12579763
Alignment:
| Q |
19 |
aattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaaattgtttgttttctattgctattaatctt |
118 |
Q |
| |
|
|||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||| ||| | |||||||| |
|
|
| T |
12580167 |
aattgaacatgaggccttcctttttacttggttgtcaatttttgtttttcctcataaaaa-atggtgacaagttgtttgttttctgttggtgttaatctt |
12580069 |
T |
|
| Q |
119 |
gctagaggaaatccaattgctttggcacctgctgtcttggctagcatatataaggatttaagtttatttaagaaaacaattattgatctgttaaaatatc |
218 |
Q |
| |
|
|||||| ||||||||||| |||||| | ||| |||||||||||| |||||||||||| ||||||||||||| || |||||| |||||||| |
|
|
| T |
12580068 |
gctagaagaaatccaatttctttggtggcaattgttttggctagcataaataaggatttaacattatttaagaaaaaaa-----aatctgtcaaaatatc |
12579974 |
T |
|
| Q |
219 |
cagttggtggtggtgatagatttcctgttgaatttactattctatcacccttttatttggttcaagtttgggtgtgggagaggttcgcaaaattacaacc |
318 |
Q |
| |
|
||| ||||| ||||| || ||||||| |||||||| ||| |||||| ||||| |||| | |||||||| | ||||||||||| |||| | ||||| |
|
|
| T |
12579973 |
---ttgttggtgatgatatatatcctgtttaatttactcttccatcacctttttacttggcttaagtttggatacgggagaggttcacaaactatcaacc |
12579877 |
T |
|
| Q |
319 |
acaacccatgttgatcaatcccagcgacactttattgtttaggtggcataaggttcaggcattgaaaattgataatgttaagttggcattagactcaact |
418 |
Q |
| |
|
|| |||||| |||||||| | || ||| |||||||| |||||| | ||||||||||||| ||| ||||||| ||||||||||| ||||||||||||| | |
|
|
| T |
12579876 |
ac-acccatattgatcaaccgcatagaccctttattgcttaggttgaataaggttcaggccttgcaaattgacaatgttaagtttgcattagactcaagt |
12579778 |
T |
|
| Q |
419 |
gtcgatgatattctt |
433 |
Q |
| |
|
|| ||||| ||||| |
|
|
| T |
12579777 |
gttaatgattttctt |
12579763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 12581424 - 12581632
Alignment:
| Q |
19 |
aattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaaattgtttgttttctattgctattaatctt |
118 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||||||||||||| || ||| |||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
12581424 |
aattgaacatgaagccttccttgctacttggttgtcaatttttgtttttcctcgtagaaaaatggtgaaaagttatttgttttctattgctattaatctt |
12581523 |
T |
|
| Q |
119 |
gctagaggaaatccaattgctttggcacctgctgtcttggctagcatatataaggatttaagtttatttaagaaaacaattattgatctgttaaaatatc |
218 |
Q |
| |
|
|||||| |||||| |||| ||||| | | |||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12581524 |
gctagaagaaatcgaattactttgccgcaaactgttttggctagcataaataaggatttaactttatttaagaaaacaattattgatctgtcaaaatatc |
12581623 |
T |
|
| Q |
219 |
cagttggtg |
227 |
Q |
| |
|
||||||| |
|
|
| T |
12581624 |
ttgttggtg |
12581632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 19 - 433
Target Start/End: Complemental strand, 12519878 - 12519468
Alignment:
| Q |
19 |
aattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaaattgtttgttttctattgctattaatctt |
118 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||| | |||||||| |
|
|
| T |
12519878 |
aattgaacatgaagccttccttttaacttggttgtcaatttttgtttttcctcataaaaa-atggtgacaaattgtttgttttctgttggtgttaatctt |
12519780 |
T |
|
| Q |
119 |
gctagaggaaatccaattgctttggcacctgctgtcttggctagcatatataaggatttaagtttatttaagaaaacaattattgatctgttaaaatatc |
218 |
Q |
| |
|
|||||| |||||||||||||||||| | | ||| |||||||||||| ||||||| |||| |||||||||||||| | |||||| |||||||| |
|
|
| T |
12519779 |
gctagaagaaatccaattgctttggtggcagttgttttggctagcataaataaggacttaactttatttaagaaaaaa-------atctgtcaaaatatc |
12519687 |
T |
|
| Q |
219 |
cagttggtggtggtgatagatttcctgttgaatttactattctatcacccttttatttggttcaagtttgggtgtgggagaggttcgcaaaattacaacc |
318 |
Q |
| |
|
||| ||| ||||| || | ||||| |||||||| |||||||||| |||||||||| | |||||||| | |||||||||| |||| | ||||| |
|
|
| T |
12519686 |
---ttgtaggtaatgatatatattctgtttaatttactcttctatcacctttttatttgggttaagtttggatacgggagaggtt-acaaactatcaacc |
12519591 |
T |
|
| Q |
319 |
acaacccatgttgatc---------aatcccagcgacactttattgtttaggtggcataaggttcaggcattgaaaattgataatgttaagttggcatta |
409 |
Q |
| |
|
|| ||||||||||||| ||| | ||| |||||||| |||||| | ||||||||||||| ||| ||||||| ||||||||||| |||||| |
|
|
| T |
12519590 |
ac-acccatgttgatcacccatggtaatgatatagactctttattgcttaggttgaataaggttcaggccttgcaaattgacaatgttaagtttgcatta |
12519492 |
T |
|
| Q |
410 |
gactcaactgtcgatgatattctt |
433 |
Q |
| |
|
||||||| |||| ||||| ||||| |
|
|
| T |
12519491 |
gactcaagtgtcaatgattttctt |
12519468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 117 - 433
Target Start/End: Complemental strand, 12495972 - 12495667
Alignment:
| Q |
117 |
ttgctagaggaaatccaattgctttggcacctgctgtcttggctagcatatataaggatttaagtttatttaagaaaacaattattgatctgttaaaata |
216 |
Q |
| |
|
|||||||| |||||||||||||||||| | | ||| |||||||||||| |||||||||||| ||||||||| |||| ||| |||| |||||| |
|
|
| T |
12495972 |
ttgctagaagaaatccaattgctttggtggcagttgttttggctagcataaataaggatttaactttatttaataaaaaaat-------ctgtcaaaata |
12495880 |
T |
|
| Q |
217 |
tccagttggtggtggtgatagatttcctgttgaatttactattctatcacccttttatttggttcaagtttgggtgtgggagaggttcgcaaaattacaa |
316 |
Q |
| |
|
|| ||| ||||| ||||| || |||| || |||||||| || ||||||| |||||||||| | |||||||| | ||||||||||| |||| | ||| |
|
|
| T |
12495879 |
tc---ttgttggtgatgatatatatcctatttaatttactcttatatcacctttttatttggcttaagtttggatacgggagaggttcacaaactatcaa |
12495783 |
T |
|
| Q |
317 |
ccacaacccatgttgatcaatcccagcgacactttattgtttaggtggcataaggttcaggcattgaaaattgataatgttaagttggcattagactcaa |
416 |
Q |
| |
|
||||| |||||||| ||||| | || ||| |||||||| |||||| | ||||||||||||| ||| ||||||| |||||| |||| ||||||||||||| |
|
|
| T |
12495782 |
ccaca-cccatgttcatcaaccacatagaccctttattgcttaggttgaataaggttcaggccttgcaaattgacaatgttcagtttgcattagactcaa |
12495684 |
T |
|
| Q |
417 |
ctgtcgatgatattctt |
433 |
Q |
| |
|
|||| ||||| ||||| |
|
|
| T |
12495683 |
gtgtcaatgattttctt |
12495667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 433
Target Start/End: Original strand, 12581647 - 12581766
Alignment:
| Q |
314 |
caaccacaacccatgttgatcaatcccagcgacactttattgtttaggtggcataaggttcaggcattgaaaattgataatgttaagttggcattagact |
413 |
Q |
| |
|
||||||||||||||||||||||| | || | | ||||||| |||||||||||||||| ||| ||||||||| |||||||||| ||||||| || |
|
|
| T |
12581647 |
caaccacaacccatgttgatcaaccacatataacatatattgttgaggtggcataaggttctggccttgaaaattagcaatgttaagtgtgcattaggct |
12581746 |
T |
|
| Q |
414 |
caactgtcgatgatattctt |
433 |
Q |
| |
|
|||||| | ||||| ||||| |
|
|
| T |
12581747 |
caactgccaatgattttctt |
12581766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 9815051 - 9815461
Alignment:
| Q |
1 |
catcgataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaaattgtttgttt |
100 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| || || |||| ||||||||||| |||||||| |||||||| | ||||||||| || ||||||| |
|
|
| T |
9815051 |
catcgacaaaggtagtgaaattgagcatgaagcgttcattgctacgtggttgtcaatctttgttttaactcataaatctttggtgaaaagttctttgttt |
9815150 |
T |
|
| Q |
101 |
tctattgctattaatcttgctagaggaaatccaattgctttggcacctgctgtcttggctagcatatataaggatttaagtttatttaagaaaacaatta |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | |||||||||||||| ||||| || ||||| || ||||| ||||||||||| |||||||||||||| |
|
|
| T |
9815151 |
tctattgctattcatcttgctagaggaaattctattgctttggcaccagctgttttagctagtatttataacgatttaagtttgtttaagaaaacaatag |
9815250 |
T |
|
| Q |
201 |
ttgatctgttaaaa-tatccagttggtggtggtgatagatttcctgttgaatttactattctatcacccttttatttggttcaagtttgggtgtgggaga |
299 |
Q |
| |
|
|| || ||| |||| |||| || |||||||||||||| |||| | ||| ||||| ||| |||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
9815251 |
ttaatttgtcaaaattatc----tgttggtggtgatagatatcctttagaagttactcttcaatcacccttttacttggttcaaatttgggtgtgggaga |
9815346 |
T |
|
| Q |
300 |
ggttcgcaaaattacaaccacaacccatgttgatcaatcccagcgacactttattgtttaggtggcataaggttcaggcattgaaaattgataatgttaa |
399 |
Q |
| |
|
||||| ||| ||||| ||| |||||||||||||||||| | | ||| |||||||||||||||| |||||||||||||| ||||||||||| |||||||| |
|
|
| T |
9815347 |
ggttccaaaatttacagccagaacccatgttgatcaatcacggagaccctttattgtttaggtgacataaggttcaggccttgaaaattgacaatgttaa |
9815446 |
T |
|
| Q |
400 |
gttggcattagactc |
414 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
9815447 |
gctggcattagactc |
9815461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 5 - 413
Target Start/End: Complemental strand, 26355027 - 26354619
Alignment:
| Q |
5 |
gataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaa---atat-ggtgaaaaattgtttgttt |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||| || || | ||||||| |||||||||||||||||| | |||| || | |||||||| || ||||||| |
|
|
| T |
26355027 |
gataaaggtagtgaagttgaacatgaagcattcattgttgcttggttatcaatttttgtttttcct-agaaaatgcatgttggtgaaaagttctttgttt |
26354929 |
T |
|
| Q |
101 |
tctattgctattaatcttgctagaggaaatccaattgctttggcacctgctgtcttggctagcatatataaggatttaagtttatttaagaaaacaatta |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||| | |||||||||||||| ||||| || ||||||||||||||||||||||| | ||||||||||| ||| |
|
|
| T |
26354928 |
cctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgtgtttaagaaaaccattg |
26354829 |
T |
|
| Q |
201 |
ttgatctgttaaaa-tatccagttggtggtggtgatagatttcctgttgaatttactattctatcacccttttatttggttcaagtttgggtgtgggaga |
299 |
Q |
| |
|
||||| ||| |||| |||| || |||||||||||||| |||| | ||| ||||| ||| |||||| ||||| ||||||||| ||||||||||||||| |
|
|
| T |
26354828 |
ttgatttgtcaaaattatc----tgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaatttgggtgtgggaga |
26354733 |
T |
|
| Q |
300 |
ggttcgcaaaattacaaccacaacccatgttgatcaatcccagcgacactttattgtttaggtggcataaggttcaggcattgaaaattgataatgttaa |
399 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||| | | ||| ||||||||||||| ||||||| ||| || || ||||||||||| |||||||| |
|
|
| T |
26354732 |
ggttcaaaaaattacaaccgcaacccatgttgatcaaccgtggagaccctttattgtttagatggcatagggtacaagccttgaaaattgacaatgttaa |
26354633 |
T |
|
| Q |
400 |
gttggcattagact |
413 |
Q |
| |
|
| ||| |||||||| |
|
|
| T |
26354632 |
gctggaattagact |
26354619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 5 - 293
Target Start/End: Original strand, 1717232 - 1717517
Alignment:
| Q |
5 |
gataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaaattgtttgttttcta |
104 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||||||| ||| |||||||||||||||| | |||||||||| | ||||||| ||| |
|
|
| T |
1717232 |
gataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaagctttggtgaaaaaatctttgtttccta |
1717331 |
T |
|
| Q |
105 |
ttgctattaatcttgctagaggaaatccaattgctttggcacctgctgtcttggctagcatatataaggatttaagtttatttaagaaaacaattattga |
204 |
Q |
| |
|
||||| || ||||||||||||||||||| |||||||||||||| ||||| || |||||||||||||||||||||| ||| |||||||||||||| ||| |
|
|
| T |
1717332 |
ttgctgttcatcttgctagaggaaatcctattgctttggcaccggctgttttagctagcatatataaggatttaactttgtttaagaaaacaatagttgg |
1717431 |
T |
|
| Q |
205 |
tctgttaaaatatccagttggtggtggtgatagatttcctgttgaatttactattctatcacccttttatttggttcaagtttgggtgt |
293 |
Q |
| |
|
| ||| ||||||||| || |||||| ||||||||| || || ||| | ||| |||||||||||| ||||||||| ||||||||| |
|
|
| T |
1717432 |
tttgtcaaaatatcc---tgttggtggcgatagattttctaaggaggttagtcttcaatcacccttttacttggttcaaatttgggtgt |
1717517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 3e-55; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 22689759 - 22689564
Alignment:
| Q |
1 |
catcgataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaatat---ggtgaaaaattgtttg |
97 |
Q |
| |
|
||||||||| |||| |||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||| |||| || |||| |
|
|
| T |
22689759 |
catcgataatggtaatgaatttgaacatgaagcatttcttgctacttggttgtcaatttttgtttttcctcataaaaatatgtcggtcaaaagttctttg |
22689660 |
T |
|
| Q |
98 |
ttttctattgctattaatcttgctagaggaaatccaattgctttggcacctgctgtcttggctagcatatataaggatttaagtttatttaagaaa |
193 |
Q |
| |
|
||| ||||| ||||| |||| |||||||| ||| | |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
22689659 |
tttactatttctattcatctggctagaggcaatactattgctttggcacctgctgttttggctagcatatataaggatttgagtttgtttaagaaa |
22689564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 22685778 - 22685642
Alignment:
| Q |
7 |
taaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaaattgtttgttttctatt |
106 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||| || ||||||||||| ||||||||||||||||||||| | ||||||||| || | ||||| | ||| |
|
|
| T |
22685778 |
taaaggtagtgaaattgagcatgaagcatttcttgctgcttggttgtcactttttgtttttcctcataaaattttggtgaaaacttctatgtttccgatt |
22685679 |
T |
|
| Q |
107 |
gctattaatcttgctagaggaaatccaattgctttgg |
143 |
Q |
| |
|
|||||| ||||||||||||| ||||| |||||||||| |
|
|
| T |
22685678 |
gctattcatcttgctagagggaatcctattgctttgg |
22685642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 83 - 214
Target Start/End: Complemental strand, 22651912 - 22651781
Alignment:
| Q |
83 |
gtgaaaaattgtttgttttctattgctattaatcttgctagaggaaatccaattgctttggcacctgctgtcttggctagcatatataaggatttaagtt |
182 |
Q |
| |
|
||||||| |||||||||| |||||||| || ||||||||||||||||||| |||||||| ||||| ||||| ||||||||||| ||||||||||||| || |
|
|
| T |
22651912 |
gtgaaaagttgtttgtttcctattgctgttcatcttgctagaggaaatcctattgcttttgcaccagctgttttggctagcatgtataaggatttaactt |
22651813 |
T |
|
| Q |
183 |
tatttaagaaaacaattattgatctgttaaaa |
214 |
Q |
| |
|
| ||||||||||||||| ||||| ||| |||| |
|
|
| T |
22651812 |
tgtttaagaaaacaattgttgatttgtcaaaa |
22651781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 22652192 - 22652119
Alignment:
| Q |
1 |
catcgataaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcata |
74 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
22652192 |
catcgataaaggtagtgaaattgaacatgaagcgttccttgctacttggttgtcaatttttgtttttgctcata |
22652119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 262 - 337
Target Start/End: Complemental strand, 22689519 - 22689444
Alignment:
| Q |
262 |
atcacccttttatttggttcaagtttgggtgtgggagaggttcgcaaaattacaaccacaacccatgttgatcaat |
337 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||| || ||||||| ||||||||||||||| |
|
|
| T |
22689519 |
atcacccttttacttggttcaagtttgggtgtgggagaggttcaaaaatttgcaaccacggcccatgttgatcaat |
22689444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 199
Target Start/End: Complemental strand, 11564232 - 11564037
Alignment:
| Q |
7 |
taaaggtagtgaaattgaacatgaagcctttcttactacttggttgtcaatttttgtttttcctcataaaaatatggtga---aaaattgtttgttttct |
103 |
Q |
| |
|
||||| |||| |||||||||||||||| || || || | ||| | || |||||||||||||||||||||| || ||| ||| || ||||||| || |
|
|
| T |
11564232 |
taaagctagtaaaattgaacatgaagcattcatttctgcatggctttccatttttgtttttcctcataaaagcttgttgatcaaaagttctttgtttcct |
11564133 |
T |
|
| Q |
104 |
attgctattaatcttgctagaggaaatccaattgctttggcacctgctgtcttggctagcatatataaggatttaagtttatttaagaaaacaatt |
199 |
Q |
| |
|
|||||| || |||||||||||||||| || |||||||| ||||| | || ||||| || ||||||||||||| |||| |||||| | |||||| |
|
|
| T |
11564132 |
attgctgttcatcttgctagaggaaaacctattgctttagcaccgtcggttctggcttgcttatataaggatttgcgtttgtttaaggagacaatt |
11564037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 11544345 - 11544419
Alignment:
| Q |
262 |
atcacccttttatttggttcaagtttgggtgtgggagaggttcgcaaaattacaaccacaacccatgttgatcaa |
336 |
Q |
| |
|
||||||| |||| ||||||||||||||||| |||||||||||| ||| || |||||| |||||| ||||||||| |
|
|
| T |
11544345 |
atcacccatttacttggttcaagtttgggtttgggagaggttcaaaaatttgcaaccaaaacccaagttgatcaa |
11544419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 22685641 - 22685596
Alignment:
| Q |
169 |
taaggatttaagtttatttaagaaaacaattattgatctgttaaaa |
214 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||| ||| |||| |
|
|
| T |
22685641 |
taaggatttaagtttttttaagaaaacaattgttgatttgtcaaaa |
22685596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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