View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16423_high_2 (Length: 391)
Name: NF16423_high_2
Description: NF16423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16423_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 6101489 - 6101089
Alignment:
| Q |
1 |
tgattttatataataagaatatacatgatgagataagaatgcatcaaagttaacggggagggacgaaagttgtgagggtcgtgaatatactatagaaata |
100 |
Q |
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| T |
6101489 |
tgattttatataataagaatatacatgatgagataagaatgcatcaaagttaacggggagggacgaaagttgtgggggtcgtgaatatactatagaaata |
6101390 |
T |
|
| Q |
101 |
gca------------------tatgaatgaataatgttagaggcagttaaagcagtatatacgtacaatatatgactggtcttagtaatttgtaagtttg |
182 |
Q |
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| T |
6101389 |
gcaatagcaatagcaatagcatatgaatgaataatgttagaggcagttaaagcagtatatacgtacaatatatgactggtcttagtaatttgtaagtttg |
6101290 |
T |
|
| Q |
183 |
tgtttgacccataactcaactacaataaaagcttcacacactgatcagactcaaagacagagattcacct----nnnnnnnnnnnnnttcatctgattct |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6101289 |
tgtttgacccataactcaactacaataaaagcttcacaaactgatcagactcaaagacagagattcaccttctctctctctctctctttcatctgattct |
6101190 |
T |
|
| Q |
279 |
gttcattcatatgtctcaacagtgaacaatcacgatctccgttttgttcgaaaacgacgccatatcttgtcctcatcctccataaaacaatcctatattt |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6101189 |
gttcattcatatgtctcaacagtgaacaatcacgatctccgttttgttcgaaaacgacgctatatcttgtcctcatcctccataaaacaatcctatattt |
6101090 |
T |
|
| Q |
379 |
t |
379 |
Q |
| |
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| |
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|
| T |
6101089 |
t |
6101089 |
T |
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