View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16423_high_3 (Length: 339)

Name: NF16423_high_3
Description: NF16423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16423_high_3
NF16423_high_3
[»] chr8 (15 HSPs)
chr8 (1-315)||(4076944-4077257)
chr8 (1-95)||(3780359-3780453)
chr8 (113-202)||(1993734-1993822)
chr8 (117-201)||(43066002-43066085)
chr8 (115-204)||(14342284-14342373)
chr8 (118-197)||(41075696-41075774)
chr8 (153-204)||(2599529-2599580)
chr8 (118-197)||(31774729-31774807)
chr8 (156-202)||(45413674-45413720)
chr8 (153-194)||(8368504-8368545)
chr8 (119-200)||(11904855-11904935)
chr8 (153-202)||(28897995-28898044)
chr8 (156-200)||(12142083-12142127)
chr8 (144-197)||(16465737-16465789)
chr8 (156-201)||(27497174-27497218)
[»] chr5 (12 HSPs)
chr5 (1-100)||(25955960-25956059)
chr5 (1-100)||(42250116-42250215)
chr5 (1-101)||(1501369-1501469)
chr5 (113-203)||(13988246-13988335)
chr5 (1-99)||(38280273-38280371)
chr5 (117-202)||(36890377-36890461)
chr5 (1-101)||(7886354-7886454)
chr5 (155-204)||(15285327-15285376)
chr5 (156-204)||(8378342-8378390)
chr5 (153-203)||(35905993-35906043)
chr5 (117-202)||(11247192-11247276)
chr5 (119-200)||(12248275-12248355)
[»] chr7 (22 HSPs)
chr7 (1-101)||(2286457-2286557)
chr7 (1-100)||(25185933-25186032)
chr7 (1-101)||(11765706-11765806)
chr7 (1-100)||(496683-496782)
chr7 (1-100)||(48057699-48057798)
chr7 (4-101)||(7527267-7527364)
chr7 (113-202)||(33496499-33496587)
chr7 (113-202)||(46576336-46576424)
chr7 (1-93)||(23844642-23844734)
chr7 (117-202)||(48460659-48460743)
chr7 (1-101)||(31427260-31427362)
chr7 (1-100)||(42535214-42535313)
chr7 (113-202)||(30922804-30922892)
chr7 (153-202)||(31741043-31741092)
chr7 (153-202)||(38755028-38755077)
chr7 (4-100)||(40855154-40855251)
chr7 (153-202)||(47480145-47480194)
chr7 (144-200)||(42974503-42974558)
chr7 (153-200)||(28713679-28713726)
chr7 (154-195)||(11752604-11752645)
chr7 (156-203)||(51937-51984)
chr7 (153-200)||(38349592-38349639)
[»] chr3 (20 HSPs)
chr3 (1-101)||(47940825-47940925)
chr3 (1-101)||(49786392-49786492)
chr3 (1-100)||(8152977-8153078)
chr3 (117-206)||(50989199-50989287)
chr3 (117-206)||(51092331-51092419)
chr3 (116-202)||(48034906-48034991)
chr3 (1-100)||(29836770-29836868)
chr3 (113-199)||(38247801-38247886)
chr3 (113-204)||(9271108-9271198)
chr3 (117-202)||(8496706-8496790)
chr3 (113-201)||(12224097-12224184)
chr3 (1-100)||(8436896-8436995)
chr3 (1-94)||(48778973-48779066)
chr3 (153-201)||(23004757-23004805)
chr3 (153-204)||(29915092-29915143)
chr3 (153-204)||(29964245-29964296)
chr3 (156-202)||(8330728-8330774)
chr3 (120-198)||(33288136-33288213)
chr3 (155-200)||(36674654-36674699)
chr3 (124-196)||(39947262-39947333)
[»] chr4 (27 HSPs)
chr4 (1-100)||(52055148-52055247)
chr4 (113-204)||(37605785-37605875)
chr4 (113-204)||(55281206-55281296)
chr4 (1-100)||(1158255-1158354)
chr4 (117-202)||(17044003-17044087)
chr4 (113-202)||(43749092-43749180)
chr4 (113-201)||(25164565-25164652)
chr4 (121-204)||(45995996-45996078)
chr4 (122-202)||(20107110-20107190)
chr4 (151-202)||(39631269-39631320)
chr4 (113-199)||(51579323-51579408)
chr4 (113-202)||(5817474-5817562)
chr4 (113-197)||(41277220-41277303)
chr4 (1-80)||(49866670-49866749)
chr4 (121-199)||(3287087-3287164)
chr4 (113-202)||(24059227-24059315)
chr4 (153-202)||(51579581-51579629)
chr4 (156-204)||(25784044-25784092)
chr4 (153-201)||(32290215-32290263)
chr4 (153-204)||(42179270-42179321)
chr4 (168-202)||(14786853-14786887)
chr4 (153-203)||(36851226-36851276)
chr4 (118-202)||(22364560-22364643)
chr4 (156-204)||(32525158-32525206)
chr4 (153-204)||(50498208-50498259)
chr4 (155-203)||(9118622-9118670)
chr4 (156-200)||(48525328-48525372)
[»] chr6 (9 HSPs)
chr6 (1-100)||(33594519-33594618)
chr6 (113-202)||(14314080-14314168)
chr6 (121-203)||(34792753-34792834)
chr6 (120-203)||(9045832-9045914)
chr6 (113-199)||(1244650-1244735)
chr6 (153-202)||(9521950-9521999)
chr6 (153-201)||(16717991-16718039)
chr6 (153-204)||(23915970-23916021)
chr6 (144-196)||(29429590-29429641)
[»] chr1 (27 HSPs)
chr1 (1-100)||(20186841-20186940)
chr1 (1-100)||(30339636-30339735)
chr1 (113-202)||(27325722-27325810)
chr1 (117-202)||(44797564-44797648)
chr1 (1-100)||(51787272-51787371)
chr1 (117-202)||(1673369-1673453)
chr1 (113-204)||(2403019-2403109)
chr1 (120-202)||(1994953-1995034)
chr1 (113-198)||(29637304-29637388)
chr1 (1-100)||(43740407-43740506)
chr1 (121-200)||(7178213-7178291)
chr1 (153-204)||(527032-527083)
chr1 (36-94)||(9673004-9673062)
chr1 (120-202)||(32267566-32267647)
chr1 (153-202)||(40030838-40030887)
chr1 (113-200)||(26040972-26041058)
chr1 (153-204)||(46845789-46845840)
chr1 (154-200)||(33502658-33502704)
chr1 (153-203)||(39858346-39858396)
chr1 (154-206)||(40294865-40294917)
chr1 (156-204)||(49430600-49430648)
chr1 (156-202)||(6487728-6487774)
chr1 (155-201)||(13276599-13276645)
chr1 (153-199)||(15225124-15225170)
chr1 (119-200)||(47571663-47571743)
chr1 (122-195)||(19989246-19989318)
chr1 (119-196)||(29731194-29731270)
[»] chr2 (18 HSPs)
chr2 (1-100)||(13922185-13922284)
chr2 (2-97)||(11828960-11829055)
chr2 (113-202)||(40095263-40095351)
chr2 (113-201)||(13697059-13697146)
chr2 (113-202)||(17823579-17823667)
chr2 (113-201)||(42061325-42061412)
chr2 (113-203)||(32599342-32599431)
chr2 (113-199)||(36272755-36272840)
chr2 (113-203)||(23860258-23860347)
chr2 (113-203)||(33555457-33555546)
chr2 (153-202)||(14945869-14945918)
chr2 (113-203)||(36709285-36709374)
chr2 (155-205)||(3121607-3121657)
chr2 (131-204)||(14242627-14242699)
chr2 (157-204)||(4434727-4434774)
chr2 (153-203)||(33299978-33300028)
chr2 (153-204)||(24475834-24475885)
chr2 (119-200)||(40216411-40216491)
[»] scaffold0533 (1 HSPs)
scaffold0533 (120-204)||(10332-10415)
[»] scaffold0933 (1 HSPs)
scaffold0933 (119-197)||(3153-3231)
[»] scaffold0005 (1 HSPs)
scaffold0005 (168-202)||(52843-52877)


Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 4076944 - 4077257
Alignment:
Q  1 aagagagacaaagtgtttgtggggtctaggctacatgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgggtgtgcatgtatcaccactc 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  4076944 aagagagacaaattgtttgtggggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatgggtatgcatgtatcatcactc 4077043  T
Q  101 annnnnnngtgttgtggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactac 200  Q
            ||||||| ||||||||||||| ||||||||||||||||| ||| |||| ||||||||||||||| ||||||||||||||||| |||||||||    
T  4077044 gtttttttgtgttgt-gggggaccacaagaacacttatcaaagttgtgtgt-gggtatacaagtggtacatgccacctaaggtggtctatatatcactac 4077141  T
Q  201 tcttgtatgaataggtgtatatacac-nnnnnnnnnnnnaaggaaggtgtatatacacttaagatgttgtagtagagagaatgtaacgttttaatcaaag 299  Q
    ||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4077142 tcttgtatgaataggtgtatatacactttttttttttttaaggaaggtgtatatacacttaagatgttgtagtagagagaatgtaacgttttaatcaaag 4077241  T
Q  300 tttttatttttatttt 315  Q
    ||||||||||||||||    
T  4077242 tttttatttttatttt 4077257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 3780359 - 3780453
Alignment:
Q  1 aagagagacaaagtgtttgtggggtctaggctacatgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgggtgtgcatgtatcac 95  Q
    |||||||||||||||||| | |||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| ||||||||||    
T  3780359 aagagagacaaagtgtttctcgggtttaggctacatgtcacatgtttgtgtggaggtttgagtgtgtatgccacctatggatgtacatgtatcac 3780453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 202
Target Start/End: Original strand, 1993734 - 1993822
Alignment:
Q  113 tgtggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    ||||||| |||||||||||||||| ||||| |||| |||||| |||||||||| |||||| |||||||||||||||||||||||||||||    
T  1993734 tgtggggagaccacaaggacacttgtcaaaattgtgtgtggg-tgtacaagtgatacatgccacctaaggtggtctatgtatcactactc 1993822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 43066002 - 43066085
Alignment:
Q  117 gggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactact 201  Q
    |||||||||||||||||||| ||||| |||| |||||  ||||||||||||||||| ||||||||||||||||||||||||||||    
T  43066002 gggggaccacaaggacacttgtcaaaattgtgtgtgga-tgtacaagtggtacatgccacctaaggtggtctatgtatcactact 43066085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 204
Target Start/End: Original strand, 14342284 - 14342373
Alignment:
Q  115 tggggggaccacaaggacacttatcaaag-ttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactctt 204  Q
    |||||||||||||||||||||| |||||  |||| |||||| |||| |||||||||||| |||||||||||||||||||||||||||||||    
T  14342284 tggggggaccacaaggacacttgtcaaaaattgtgtgtggg-tgtataagtggtacatgccacctaaggtggtctatgtatcactactctt 14342373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 197
Target Start/End: Original strand, 41075696 - 41075774
Alignment:
Q  118 ggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcac 197  Q
    |||||||||| | |||| | ||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41075696 ggggaccacatgaacacatgtcacaattgtatgtggg-tgtacaagtggtacatgtcacctaaggtggtctatgtatcac 41075774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 2599580 - 2599529
Alignment:
Q  153 gggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactctt 204  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  2599580 gggtgtataagtggtacatgccacctaaggtggtctatgtatcactactctt 2599529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 118 - 197
Target Start/End: Complemental strand, 31774807 - 31774729
Alignment:
Q  118 ggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcac 197  Q
    |||||||||| | |||| | ||| | ||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  31774807 ggggaccacatgaacacatgtcacaattgtatgtgag-tgtacaagtggtacatgtcacctaaggtggtctatgtatcac 31774729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 45413674 - 45413720
Alignment:
Q  156 tgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||    
T  45413674 tgtataagtggtacatgccacctaaggtggtctatgtatcactactc 45413720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 8368504 - 8368545
Alignment:
Q  153 gggtgtacaagtggtacatgtcacctaaggtggtctatgtat 194  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  8368504 gggtgtacaagtggtacatgccacctaaggtggtctatgtat 8368545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 11904935 - 11904855
Alignment:
Q  119 gggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactac 200  Q
    ||||||||| |||||| | ||| | || |||||||| ||||||||||||| ||| ||||||||||||| |||||||||||||    
T  11904935 gggaccacatggacacatgtcacaattatatgtggg-tgtacaagtggtatatgccacctaaggtggtttatgtatcactac 11904855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 28898044 - 28897995
Alignment:
Q  153 gggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    ||||||| |||||||| ||| |||||||||||||||||||||||||||||    
T  28898044 gggtgtataagtggtatatgccacctaaggtggtctatgtatcactactc 28897995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 12142127 - 12142083
Alignment:
Q  156 tgtacaagtggtacatgtcacctaaggtggtctatgtatcactac 200  Q
    ||||||||||||| ||| ||||||||||||| |||||||||||||    
T  12142127 tgtacaagtggtatatgccacctaaggtggtttatgtatcactac 12142083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 16465737 - 16465789
Alignment:
Q  144 ttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcac 197  Q
    ||||||||||| | ||||||||||||||| |  |||||||||||||||||||||    
T  16465737 ttgtatgtggg-tatacaagtggtacatgccgtctaaggtggtctatgtatcac 16465789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 27497218 - 27497174
Alignment:
Q  156 tgtacaagtggtacatgtcacctaaggtggtctatgtatcactact 201  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  27497218 tgtacaagtggtacatgccacctaaagtggtct-tgtatcactact 27497174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 7e-40; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 25955960 - 25956059
Alignment:
Q  1 aagagagacaaagtgtttgtggggtctaggctacatgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgggtgtgcatgtatcaccactc 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  25955960 aagagagacaaagtgtttgtggggtctaggccacatgtcacatgtttgtgtggaggtttaaatgtgtatgccacctatgagtgtgcatgtatcaccactc 25956059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 42250215 - 42250116
Alignment:
Q  1 aagagagacaaagtgtttgtggggtctaggctacatgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgggtgtgcatgtatcaccactc 100  Q
    |||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||| |||| ||  |||||||||||||||||||||||||    
T  42250215 aagagagacaaagtgtttgtggggtctaagccacatgtcacatgtttgtgtggaggtttaagtgtctatgtcatttatgggtgtgcatgtatcaccactc 42250116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 1501369 - 1501469
Alignment:
Q  1 aagagagacaaagtgtttgtggggtctaggctacatgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgggtgtgcatgtatcaccactc 100  Q
    |||||||||||||||| | ||||||||||||||||||||| ||| || |||||||||||||||||||||| ||||||||| | |||||||||||||||||    
T  1501369 aagagagacaaagtgtatatggggtctaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgtcacctatggatctgcatgtatcaccactc 1501468  T
Q  101 a 101  Q
    |    
T  1501469 a 1501469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 113 - 203
Target Start/End: Complemental strand, 13988335 - 13988246
Alignment:
Q  113 tgtggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactct 203  Q
    |||||||||||||||||||||||| ||||| |||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13988335 tgtggggggaccacaaggacacttgtcaaaattgtgtgtggg-tgtacaagtggtacatgccacctaaggtggtctatgtatcactactct 13988246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 38280273 - 38280371
Alignment:
Q  1 aagagagacaaagtgtttgtggggtctaggctacatgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgggtgtgcatgtatcaccact 99  Q
    ||||||||||||||||||||||||||||||  || ||||||||| || ||||||||||||||||||||| |||||||||| ||| ||||||||||||||    
T  38280273 aagagagacaaagtgtttgtggggtctaggacacgtgtcacatgtttatgtggaggtttaagtgtgtataccacctatggatgtacatgtatcaccact 38280371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 36890461 - 36890377
Alignment:
Q  117 gggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    |||||||||||||||||||| ||||| |||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  36890461 gggggaccacaaggacacttgtcaaaattgtgtgtggg-tgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 36890377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 7886454 - 7886354
Alignment:
Q  1 aagagagacaaagtgtttgtggggtctaggctacatgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgggtgtgcatgtatcaccactc 100  Q
    |||||||||||| | | |||||| | ||||| |||||||||||| ||||||||||||||||||||||||| |||||||  || |||||| ||||||||||    
T  7886454 aagagagacaaaatatatgtgggatttaggccacatgtcacatgtttgtgtggaggtttaagtgtgtatgtcacctataagtatgcatgaatcaccactc 7886355  T
Q  101 a 101  Q
    |    
T  7886354 a 7886354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 15285376 - 15285327
Alignment:
Q  155 gtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactctt 204  Q
    ||||| |||||||||||| || ||||||||||||||||||||||||||||    
T  15285376 gtgtataagtggtacatgccatctaaggtggtctatgtatcactactctt 15285327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 8378390 - 8378342
Alignment:
Q  156 tgtacaagtggtacatgtcacctaaggtggtctatgtatcactactctt 204  Q
    ||||||| |||||||||||| ||||||||||||||||||||| ||||||    
T  8378390 tgtacaaatggtacatgtcatctaaggtggtctatgtatcaccactctt 8378342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 35906043 - 35905993
Alignment:
Q  153 gggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactct 203  Q
    ||||||| ||||| |||||  ||||||||||||||||||||||| ||||||    
T  35906043 gggtgtataagtgatacataccacctaaggtggtctatgtatcattactct 35905993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 11247276 - 11247192
Alignment:
Q  117 gggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    |||||| ||||| |||| || ||||| |||| |||||  ||||||||| ||| ||| || ||||||| ||||||||||||||||||    
T  11247276 gggggatcacaaagacatttgtcaaaattgtgtgtgga-tgtacaagtagtatatgccatctaaggtagtctatgtatcactactc 11247192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 12248355 - 12248275
Alignment:
Q  119 gggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactac 200  Q
    ||||||||| |||||| | ||| | || |||||||  ||||||||||||| ||| ||||||||||| | |||||||||||||    
T  12248355 gggaccacatggacacatgtcacaattatatgtgga-tgtacaagtggtatatgccacctaaggtgatttatgtatcactac 12248275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 2286557 - 2286457
Alignment:
Q  1 aagagagacaaagtgtttgtggggtctaggctacatgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgggtgtgcatgtatcaccactc 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||| ||||    
T  2286557 aagagagacaaagtgtttgtggggtctaggccacatgtcacatgtttgtgtggaggtttaagtgtgtatgccaccaataggtgtgcatgtatcactactc 2286458  T
Q  101 a 101  Q
    |    
T  2286457 a 2286457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 25185933 - 25186032
Alignment:
Q  1 aagagagacaaagtgtttgtggggtctaggctacatgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgggtgtgcatgtatcaccactc 100  Q
    |||||||| ||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||    
T  25185933 aagagagataaagtatttgtggggtctaggccacatgtcacatgtttgtgtggaggtttaagtgtgtatgtcacctatgagtgtgcatgcatcaccactc 25186032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 11765806 - 11765706
Alignment:
Q  1 aagagagacaaagtgtttgtggggtctaggctacatgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgggtgtgcatgtatcaccactc 100  Q
    |||||||||||||||||||||||||| |||  || ||||||||| || |||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  11765806 aagagagacaaagtgtttgtggggtcaaggacacgtgtcacatgtttatgtggaggtttaagtgtgtatgccacctatggatgtacatgtatcaccactc 11765707  T
Q  101 a 101  Q
    |    
T  11765706 a 11765706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 496782 - 496683
Alignment:
Q  1 aagagagacaaagtgtttgtggggtctaggctacatgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgggtgtgcatgtatcaccactc 100  Q
    ||||||||||||||||||||||||||||||  || ||||| ||| || |||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  496782 aagagagacaaagtgtttgtggggtctaggacacgtgtcatatgtttatgtggaggtttaagtgtgtatgccacctatggatgtacatgtatcaccactc 496683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 48057699 - 48057798
Alignment:
Q  1 aagagagacaaagtgtttgtggggtctaggctacatgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgggtgtgcatgtatcaccactc 100  Q
    ||||||||||||||||||||||||||||||  || ||||||||| || |||||| |||||| | |||||||||||||||||||| |||||||||||||||    
T  48057699 aagagagacaaagtgtttgtggggtctaggacacgtgtcacatgtttatgtggaagtttaaatatgtatgccacctatgggtgtacatgtatcaccactc 48057798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 7527267 - 7527364
Alignment:
Q  4 agagacaaagtgtttgtggggtctaggctacatgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgggtgtgcatgtatcaccactca 101  Q
    ||||||||||||||| ||| |||||||| |||||||||||| |||||||||||||||||||||||||||||| |||  | ||||||||||||| ||||    
T  7527267 agagacaaagtgtttatggagtctaggccacatgtcacatgtttgtgtggaggtttaagtgtgtatgccaccaatgaatatgcatgtatcacccctca 7527364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 33496587 - 33496499
Alignment:
Q  113 tgtggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    |||||||||| ||||| ||||||| ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  33496587 tgtggggggatcacaaagacacttgtcaaaattatatgtggg-tgtacaagtggtacatgtcacctaaggtggtctatgtatccctactc 33496499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 202
Target Start/End: Original strand, 46576336 - 46576424
Alignment:
Q  113 tgtggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    |||||||| ||||||||||||||| | ||| |||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  46576336 tgtgggggaaccacaaggacacttgttaaaattgtgtgtggg-tgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 46576424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 23844734 - 23844642
Alignment:
Q  1 aagagagacaaagtgtttgtggggtctaggctacatgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgggtgtgcatgtatc 93  Q
    ||||||||||||||||||||| ||||||||  |||||||||||| || ||||||| ||| ||||||||||  |||||||| ||||||||||||    
T  23844734 aagagagacaaagtgtttgtgaggtctagggcacatgtcacatgtttatgtggagatttgagtgtgtatgttacctatggatgtgcatgtatc 23844642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 48460743 - 48460659
Alignment:
Q  117 gggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    |||||| || |||||||||| ||||| ||||||||||  ||||||| ||||||||| |||||||||||||||||||||||||||||    
T  48460743 gggggatcataaggacacttgtcaaaattgtatgtgga-tgtacaaatggtacatgccacctaaggtggtctatgtatcactactc 48460659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 31427260 - 31427362
Alignment:
Q  1 aagagagacaaagtgtttgtggggtctaggctacatgtcacatgcttgtgtggaggtttaagtgtgtatgc--cacctatgggtgtgcatgtatcaccac 98  Q
    |||||||||||||||||||||| |||||  | |||||||||||  || || |||||||||| | |||||||  ||||||||| |||||||||||||||||    
T  31427260 aagagagacaaagtgtttgtggagtctaaaccacatgtcacatatttatgcggaggtttaattatgtatgccacacctatggatgtgcatgtatcaccac 31427359  T
Q  99 tca 101  Q
    |||    
T  31427360 tca 31427362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 42535214 - 42535313
Alignment:
Q  1 aagagagacaaagtgtttgtggggtctaggctacatgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgggtgtgcatgtatcaccactc 100  Q
    ||||||||||||||||||||||| | || |  || ||||||||| || |||||||||||||||||||||| |||||||| |||| ||| ||||| |||||    
T  42535214 aagagagacaaagtgtttgtgggatataagacacgtgtcacatgtttatgtggaggtttaagtgtgtatgtcacctatgagtgtacatatatcatcactc 42535313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 202
Target Start/End: Original strand, 30922804 - 30922892
Alignment:
Q  113 tgtggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    ||||||||||| |||||||||||| ||||| || | ||||   |||||| |||||||||  ||||||||||| |||||||||||||||||    
T  30922804 tgtggggggactacaaggacacttgtcaaaattatgtgtgaa-tgtacatgtggtacataccacctaaggtgatctatgtatcactactc 30922892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 31741092 - 31741043
Alignment:
Q  153 gggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    ||||||| |||||||||||| ||||||||||||||||||||||| |||||    
T  31741092 gggtgtataagtggtacatgccacctaaggtggtctatgtatcattactc 31741043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 38755028 - 38755077
Alignment:
Q  153 gggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    |||||| ||||||||||||| ||||||||||||||||||||||| |||||    
T  38755028 gggtgttcaagtggtacatgccacctaaggtggtctatgtatcattactc 38755077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 40855154 - 40855251
Alignment:
Q  4 agagacaaagtgtttgtggggtctaggct-acatgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgggtgtgcatgtatcaccactc 100  Q
    |||||||||||||||||| ||||||| |  ||| |||||||| |||||| ||||||||||||| ||| |||| ||||| | |||||| |||| |||||    
T  40855154 agagacaaagtgtttgtgaggtctagacccacaggtcacatgtttgtgtagaggtttaagtgtatataccacatatggatatgcatgcatcatcactc 40855251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 47480145 - 47480194
Alignment:
Q  153 gggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    |||||||||| ||||||||| ||||||||||||||||||||||| |||||    
T  47480145 gggtgtacaaatggtacatgccacctaaggtggtctatgtatcattactc 47480194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 42974503 - 42974558
Alignment:
Q  144 ttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactac 200  Q
    ||||||||||| |||| |||||||||||| ||||||||||||| |||||||||||||    
T  42974503 ttgtatgtggg-tgtataagtggtacatgccacctaaggtggtttatgtatcactac 42974558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 28713726 - 28713679
Alignment:
Q  153 gggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactac 200  Q
    |||||||||||||||| ||| ||||||||||||| |||||||||||||    
T  28713726 gggtgtacaagtggtatatgccacctaaggtggtttatgtatcactac 28713679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 11752645 - 11752604
Alignment:
Q  154 ggtgtacaagtggtacatgtcacctaaggtggtctatgtatc 195  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  11752645 ggtgtacaagtgatacatgccacctaaggtggtctatgtatc 11752604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 51984 - 51937
Alignment:
Q  156 tgtacaagtggtacatgtcacctaaggtggtctatgtatcactactct 203  Q
    ||||||| | ||||||  ||||||||||||||||||||||||||||||    
T  51984 tgtacaaatagtacataccacctaaggtggtctatgtatcactactct 51937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 38349592 - 38349639
Alignment:
Q  153 gggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactac 200  Q
    |||||||||||||||| ||| |||||||| |||| |||||||||||||    
T  38349592 gggtgtacaagtggtatatgccacctaagatggtttatgtatcactac 38349639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 47940925 - 47940825
Alignment:
Q  1 aagagagacaaagtgtttgtggggtctaggctacatgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgggtgtgcatgtatcaccactc 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||| ||||    
T  47940925 aagagagacaaagtgtttgtggggtctaggccacatgtcacatgtttgtgtggaggtttaagtgtgtatgccaccaataggtgtgcatgtatcactactc 47940826  T
Q  101 a 101  Q
    |    
T  47940825 a 47940825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 49786492 - 49786392
Alignment:
Q  1 aagagagacaaagtgtttgtggggtctaggctacatgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgggtgtgcatgtatcaccactc 100  Q
    ||||||||||||||||||||||||||||||  || ||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  49786492 aagagagacaaagtgtttgtggggtctaggacacgtgtcacatgtttatgtggaggtttaagtgtgtatgccacctatgggtgtacatgtatcaccgctc 49786393  T
Q  101 a 101  Q
    |    
T  49786392 a 49786392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 8153078 - 8152977
Alignment:
Q  1 aagagagacaaagtgtttgtggggtctaggctacatgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgggtgtgc--atgtatcaccac 98  Q
    |||||||||||||||||||||| |||||||| |||||||||||| || |||||||||||| ||||||||||||||||| |||||||  ||||||||||||    
T  8153078 aagagagacaaagtgtttgtggagtctaggccacatgtcacatgtttatgtggaggtttaggtgtgtatgccacctataggtgtgcatatgtatcaccac 8152979  T
Q  99 tc 100  Q
    ||    
T  8152978 tc 8152977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 50989287 - 50989199
Alignment:
Q  117 gggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactcttgt 206  Q
    |||||||||||||||||||| ||||| |||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  50989287 gggggaccacaaggacacttgtcaaaattgtgtgtggg-tgtacaagtggtacatgccacctaaggtggtctatgtatcactactcttgt 50989199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 51092419 - 51092331
Alignment:
Q  117 gggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactcttgt 206  Q
    |||||||||||||||||||| ||||| |||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  51092419 gggggaccacaaggacacttgtcaaaattgtgtgtggg-tgtacaagtggtacatgccacctaaggtggtctatgtatcactactcttgt 51092331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 202
Target Start/End: Original strand, 48034906 - 48034991
Alignment:
Q  116 ggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    ||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||    
T  48034906 ggggggaccacaaggacacttgtcaaaattgtatgtggg-tgtacaagtggtacatgtcacctaaggtggtttatgtatcaccactc 48034991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 29836770 - 29836868
Alignment:
Q  1 aagagagacaaagtgtttgtggggtctaggctacatgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgggtgtgcatgtatcaccactc 100  Q
    |||||||||||||| |||||||||| ||||  | |||| ||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29836770 aagagagacaaagt-tttgtggggtgtaggtcatatgttacatatttgtgtggaggtttaagtgtgtatgccacctatgagtgtgcatgtatcaccactc 29836868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 113 - 199
Target Start/End: Complemental strand, 38247886 - 38247801
Alignment:
Q  113 tgtggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcacta 199  Q
    |||||||| ||||||||||||||| ||||| |||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  38247886 tgtgggggaaccacaaggacacttgtcaaaattgtgtgtggg-tgtacaagtggtacatgccacctaaggtggtctatgtatcacta 38247801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 113 - 204
Target Start/End: Complemental strand, 9271198 - 9271108
Alignment:
Q  113 tgtggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactctt 204  Q
    ||||| |||||||||||||||||| ||||| || | |||||| ||||||||||||||||| || ||||||||||||||||||||||||||||    
T  9271198 tgtggagggaccacaaggacacttgtcaaaattatgtgtggg-tgtacaagtggtacatgccatctaaggtggtctatgtatcactactctt 9271108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 8496790 - 8496706
Alignment:
Q  117 gggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    |||||||||||| ||||||| ||||| ||||||||||| || |||||||||||||| ||||||||||||||||||||||| |||||    
T  8496790 gggggaccacaaagacacttgtcaaaattgtatgtggg-tggacaagtggtacatgccacctaaggtggtctatgtatcaatactc 8496706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 12224097 - 12224184
Alignment:
Q  113 tgtggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactact 201  Q
    |||| ||||||||||||||||||| ||||| |||| |||||| ||||||| ||||||||| ||||||||||||| ||||||||||||||    
T  12224097 tgtgaggggaccacaaggacacttgtcaaaattgtgtgtggg-tgtacaaatggtacatgccacctaaggtggtttatgtatcactact 12224184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 8436896 - 8436995
Alignment:
Q  1 aagagagacaaagtgtttgtggggtctaggctacatgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgggtgtgcatgtatcaccactc 100  Q
    |||||||||||||||||||||||||||| |  || ||||| ||  || ||| ||||||||| |||||||||||||||||||||| ||| |||||||||||    
T  8436896 aagagagacaaagtgtttgtggggtctaagacacgtgtcatatatttatgtagaggtttaaatgtgtatgccacctatgggtgtacatatatcaccactc 8436995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 48778973 - 48779066
Alignment:
Q  1 aagagagacaaagtgtttgtggggtctaggctacatgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgggtgtgcatgtatca 94  Q
    |||||||| ||||||||| ||| |||||| | |||||||||||  || |||||| |||||| || ||||||||||||| |||||||||||||||    
T  48778973 aagagagataaagtgtttatggagtctagaccacatgtcacatatttatgtggatgtttaaatgagtatgccacctataggtgtgcatgtatca 48779066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 23004805 - 23004757
Alignment:
Q  153 gggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactact 201  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23004805 gggtgtacaagtggtacatgccacctaaggtggtctatgtatcactact 23004757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 29915092 - 29915143
Alignment:
Q  153 gggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactctt 204  Q
    |||||||||||||||| ||| ||| |||||||||||||||||||||||||||    
T  29915092 gggtgtacaagtggtatatgccacataaggtggtctatgtatcactactctt 29915143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 29964245 - 29964296
Alignment:
Q  153 gggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactctt 204  Q
    |||||||||||||||| ||| ||| |||||||||||||||||||||||||||    
T  29964245 gggtgtacaagtggtatatgccacataaggtggtctatgtatcactactctt 29964296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 8330728 - 8330774
Alignment:
Q  156 tgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||    
T  8330728 tgtacaagtggtacatgccatctaaggtggtctatgtatcactactc 8330774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 120 - 198
Target Start/End: Complemental strand, 33288213 - 33288136
Alignment:
Q  120 ggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcact 198  Q
    ||||||||  ||||| ||||| | |||| |||||| ||||||||||||||||  |||||||||||||||||||||||||    
T  33288213 ggaccacatagacacatatcacaattgtgtgtggg-tgtacaagtggtacataccacctaaggtggtctatgtatcact 33288136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 36674654 - 36674699
Alignment:
Q  155 gtgtacaagtggtacatgtcacctaaggtggtctatgtatcactac 200  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||    
T  36674654 gtgtacaagtggtatatgtcacctaaggtggtttatgtatcactac 36674699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 39947262 - 39947333
Alignment:
Q  124 cacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatca 196  Q
    |||| |||||| ||||| | ||||||||||| |||| |||||||||||||||| ||||||||||||| |||||    
T  39947262 cacatggacacatatcacaattgtatgtggg-tgtataagtggtacatgtcacttaaggtggtctatatatca 39947333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 52055148 - 52055247
Alignment:
Q  1 aagagagacaaagtgtttgtggggtctaggctacatgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgggtgtgcatgtatcaccactc 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||  |||||||||||||||||||    
T  52055148 aagagagacaaagtgtttgtggggtctaggccacatgtcacatgtttgtgtagaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 52055247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 113 - 204
Target Start/End: Original strand, 37605785 - 37605875
Alignment:
Q  113 tgtggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactctt 204  Q
    |||||||||||||||||||||||| ||||| |||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37605785 tgtggggggaccacaaggacacttgtcaaaattgtgtgtggg-tgtacaagtggtacatgccacctaaggtggtctatgtatcactactctt 37605875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 113 - 204
Target Start/End: Complemental strand, 55281296 - 55281206
Alignment:
Q  113 tgtggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactctt 204  Q
    |||||||||||||||||||||||| ||||| |||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  55281296 tgtggggggaccacaaggacacttgtcaaaattgtgtgtggg-tgtacaagtggtacatgccacctaaggtggtctatgtatcactactctt 55281206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 1158255 - 1158354
Alignment:
Q  1 aagagagacaaagtgtttgtggggtctaggctacatgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgggtgtgcatgtatcaccactc 100  Q
    |||||||||||| ||||||| |||||||||| |||||||||||| ||||||||||||||||||||||| |||  |||| | ||||||||||||| |||||    
T  1158255 aagagagacaaaatgtttgtagggtctaggccacatgtcacatgtttgtgtggaggtttaagtgtgtacgccttctatcgatgtgcatgtatcatcactc 1158354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 17044087 - 17044003
Alignment:
Q  117 gggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    |||| ||||||||||||||| ||||| |||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  17044087 ggggaaccacaaggacacttgtcaaaattgtgtgtggg-tgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 17044003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 43749180 - 43749092
Alignment:
Q  113 tgtggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    ||||| |||||||||||||||||| ||||| || | |||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  43749180 tgtggagggaccacaaggacacttgtcaaaattatgtgtggg-tgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 43749092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 25164565 - 25164652
Alignment:
Q  113 tgtggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactact 201  Q
    ||||| || ||||||||||||||| ||||| |||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  25164565 tgtggaggaaccacaaggacacttgtcaaaattgtgtgtggg-tgtacaagtggtacatgccacctaaggtggtctatgtatcactact 25164652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 121 - 204
Target Start/End: Original strand, 45995996 - 45996078
Alignment:
Q  121 gaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactctt 204  Q
    ||||||||| |||||| ||||| |||| |||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  45995996 gaccacaagaacacttgtcaaaattgtgtgtggg-tgtacaagtggtacatgccacctaagatggtctatgtatcactactctt 45996078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 20107190 - 20107110
Alignment:
Q  122 accacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    |||||| |||||| | ||| | |||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20107190 accacatggacacatgtcacaattgtgtgcggggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 20107110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 202
Target Start/End: Original strand, 39631269 - 39631320
Alignment:
Q  151 tggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  39631269 tggggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 39631320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 113 - 199
Target Start/End: Complemental strand, 51579408 - 51579323
Alignment:
Q  113 tgtggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcacta 199  Q
    |||| ||| |||||| |||||| | ||| | ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  51579408 tgtgtgggaaccacatggacacatgtcacaattgtatgtggg-tgtacaagtggtacatgccacctaaggtggtctatgtatcacta 51579323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 113 - 202
Target Start/End: Original strand, 5817474 - 5817562
Alignment:
Q  113 tgtggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    |||| |||||||||| |||||| | ||| | |||| |||||| ||||||||||||||||| |||||||| ||||||||||||||||||||    
T  5817474 tgtgtggggaccacatggacacatgtcacaattgtgtgtggg-tgtacaagtggtacatgccacctaagatggtctatgtatcactactc 5817562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 41277303 - 41277220
Alignment:
Q  113 tgtggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcac 197  Q
    |||| |||||||||| | |||| | ||| | ||||||||||| |||||| |||||||||||||||||||||| ||||||||||||    
T  41277303 tgtgtggggaccacatgaacacatgtcacaattgtatgtggg-tgtacaggtggtacatgtcacctaaggtgatctatgtatcac 41277220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 49866749 - 49866670
Alignment:
Q  1 aagagagacaaagtgtttgtggggtctaggctacatgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgg 80  Q
    |||||||||||||||||| || |||||| |  |||||||||||  ||||||| ||||||||| |||||| ||||||||||    
T  49866749 aagagagacaaagtgtttatgtggtctaagtcacatgtcacatatttgtgtgaaggtttaagcgtgtataccacctatgg 49866670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 121 - 199
Target Start/End: Complemental strand, 3287164 - 3287087
Alignment:
Q  121 gaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcacta 199  Q
    |||||||||||| ||| ||||| |||| |||||| ||||||||||||||||  || |||||||||| ||||||||||||    
T  3287164 gaccacaaggactcttgtcaaaattgtgtgtggg-tgtacaagtggtacataccatctaaggtggtttatgtatcacta 3287087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 202
Target Start/End: Original strand, 24059227 - 24059315
Alignment:
Q  113 tgtggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    |||| ||| |||||| |||||| | ||| | ||||||||||| ||||||| || |||||| || ||||||||||||||||||||||||||    
T  24059227 tgtgtgggaaccacatggacacatgtcacaattgtatgtggg-tgtacaaatgatacatgccatctaaggtggtctatgtatcactactc 24059315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 51579629 - 51579581
Alignment:
Q  153 gggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  51579629 gggtgtacaagtggtacatgccacctaaggtggtct-tgtatcactactc 51579581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 25784044 - 25784092
Alignment:
Q  156 tgtacaagtggtacatgtcacctaaggtggtctatgtatcactactctt 204  Q
    ||||||||||||||||| |||||||| || |||||||||||||||||||    
T  25784044 tgtacaagtggtacatgccacctaagatgatctatgtatcactactctt 25784092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 32290263 - 32290215
Alignment:
Q  153 gggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactact 201  Q
    ||||||| |||||||||||| |||||||| |||||||||||||||||||    
T  32290263 gggtgtataagtggtacatgccacctaagatggtctatgtatcactact 32290215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 42179270 - 42179321
Alignment:
Q  153 gggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactctt 204  Q
    ||||||| |||||||||||  ||||||||||||||||||||||| |||||||    
T  42179270 gggtgtataagtggtacataccacctaaggtggtctatgtatcattactctt 42179321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 202
Target Start/End: Original strand, 14786853 - 14786887
Alignment:
Q  168 acatgtcacctaaggtggtctatgtatcactactc 202  Q
    |||||||||||||||||||||||||||||||||||    
T  14786853 acatgtcacctaaggtggtctatgtatcactactc 14786887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 36851276 - 36851226
Alignment:
Q  153 gggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactct 203  Q
    |||||||||||||||||||| ||| |||||||||||||| |||||| ||||    
T  36851276 gggtgtacaagtggtacatgccacttaaggtggtctatgcatcactgctct 36851226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 202
Target Start/End: Original strand, 22364560 - 22364643
Alignment:
Q  118 ggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    |||||||||| |||||| ||||| | |||||| |||| |||| |||||||| ||| |||||||| || | |||||||||||||||    
T  22364560 ggggaccacatggacacatatcacaattgtatatggg-tgtataagtggtatatgccacctaagttgatttatgtatcactactc 22364643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 32525158 - 32525206
Alignment:
Q  156 tgtacaagtggtacatgtcacctaaggtggtctatgtatcactactctt 204  Q
    |||| |||||||| ||| |||||||| ||||||||||||||||||||||    
T  32525158 tgtataagtggtatatgccacctaagatggtctatgtatcactactctt 32525206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 50498259 - 50498208
Alignment:
Q  153 gggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactctt 204  Q
    ||||||| |||||||||||   |||||||||| |||||||||||||||||||    
T  50498259 gggtgtataagtggtacatactacctaaggtgatctatgtatcactactctt 50498208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 9118622 - 9118670
Alignment:
Q  155 gtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactct 203  Q
    |||||||||| || |||| ||||||| ||||| ||||||||||||||||    
T  9118622 gtgtacaagttgtgcatgccacctaaagtggtttatgtatcactactct 9118670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 48525372 - 48525328
Alignment:
Q  156 tgtacaagtggtacatgtcacctaaggtggtctatgtatcactac 200  Q
    ||||||||||||| ||| ||||||| ||||| |||||||||||||    
T  48525372 tgtacaagtggtatatgccacctaaagtggtttatgtatcactac 48525328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 33594519 - 33594618
Alignment:
Q  1 aagagagacaaagtgtttgtggggtctaggctacatgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgggtgtgcatgtatcaccactc 100  Q
    |||||||||||||| |||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||| |||| |||||||||||||| ||||    
T  33594519 aagagagacaaagtatttgtggggtctaggccacatgtcacatgtttgtgtgaaggtttaagtgtgtatgccaccaatggatgtgcatgtatcactactc 33594618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 113 - 202
Target Start/End: Original strand, 14314080 - 14314168
Alignment:
Q  113 tgtggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    |||||||| ||||||||||||||| ||||| |||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  14314080 tgtgggggaaccacaaggacacttgtcaaaattgtgtgtggg-tgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 14314168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 34792753 - 34792834
Alignment:
Q  121 gaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactct 203  Q
    |||||||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34792753 gaccacaaggacacttgtcaaaattatatgtggg-tgtacaagtggtacatgccacctaaggtggtctatgtatcactactct 34792834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 9045914 - 9045832
Alignment:
Q  120 ggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactct 203  Q
    |||||||||| |||||| ||||| |||| |||||| |||||||||| |||||| ||||||||||||||||||||||||||||||    
T  9045914 ggaccacaagaacacttgtcaaaattgtgtgtggg-tgtacaagtgatacatgccacctaaggtggtctatgtatcactactct 9045832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 113 - 199
Target Start/End: Original strand, 1244650 - 1244735
Alignment:
Q  113 tgtggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcacta 199  Q
    ||||||||||||||||||||||||  |||| |||| |||||  ||||||||||||||||| ||| ||||||||||||||||||||||    
T  1244650 tgtggggggaccacaaggacacttgccaaaattgtgtgtgga-tgtacaagtggtacatgccacttaaggtggtctatgtatcacta 1244735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 9521950 - 9521999
Alignment:
Q  153 gggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    |||||||||||||||||||| ||||||||||| ||||||||| |||||||    
T  9521950 gggtgtacaagtggtacatgccacctaaggtgatctatgtattactactc 9521999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 16718039 - 16717991
Alignment:
Q  153 gggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactact 201  Q
    |||||||||||||||| ||| ||||||||||||| ||||||||||||||    
T  16718039 gggtgtacaagtggtatatgccacctaaggtggtttatgtatcactact 16717991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 23916021 - 23915970
Alignment:
Q  153 gggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactctt 204  Q
    ||||||| |||||||||||| || |||||||| |||||||||||||||||||    
T  23916021 gggtgtataagtggtacatgccatctaaggtgatctatgtatcactactctt 23915970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 29429641 - 29429590
Alignment:
Q  144 ttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatca 196  Q
    ||||||||||| ||||||||||||||||| |||||||||| |||| |||||||    
T  29429641 ttgtatgtggg-tgtacaagtggtacatgccacctaaggtagtctgtgtatca 29429590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 20186841 - 20186940
Alignment:
Q  1 aagagagacaaagtgtttgtggggtctaggctacatgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgggtgtgcatgtatcaccactc 100  Q
    ||||||||||||||||||||||| ||||||  || ||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20186841 aagagagacaaagtgtttgtgggatctaggacacgtgtcacatgtttatgtggaggtttaagtgtgtatgccacctatgggtgtacatgtatcaccactc 20186940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 30339735 - 30339636
Alignment:
Q  1 aagagagacaaagtgtttgtggggtctaggctacatgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgggtgtgcatgtatcaccactc 100  Q
    ||||||||||||||||||||||||||||||  || ||||||||| || ||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  30339735 aagagagacaaagtgtttgtggggtctaggacacgtgtcacatgtttatgtagaggtttaagtgtgtatgccacctatgggtgtacatgtatcaccactc 30339636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 113 - 202
Target Start/End: Original strand, 27325722 - 27325810
Alignment:
Q  113 tgtggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    |||||||| ||||||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  27325722 tgtgggggaaccacaaggacacttatcaaaattgtgtgtggg-tgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 27325810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 117 - 202
Target Start/End: Original strand, 44797564 - 44797648
Alignment:
Q  117 gggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    |||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  44797564 gggggaccacaaggacacttatcaaaattgtgtgtggg-tgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 44797648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 51787371 - 51787272
Alignment:
Q  1 aagagagacaaagtgtttgtggggtctaggctacatgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgggtgtgcatgtatcaccactc 100  Q
    |||||||||||||||||||||||||||||   || ||||||||| || |||| ||||||||||||||||||||||||||| ||| |||||||||||||||    
T  51787371 aagagagacaaagtgtttgtggggtctagagcacgtgtcacatgtttatgtgaaggtttaagtgtgtatgccacctatggatgtacatgtatcaccactc 51787272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 1673453 - 1673369
Alignment:
Q  117 gggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    |||| ||||||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||| ||||||||||||||||||||    
T  1673453 ggggaaccacaaggacacttatcaaaattgtgtgtggg-tgtacaagtggtacatgccacctaagatggtctatgtatcactactc 1673369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 113 - 204
Target Start/End: Original strand, 2403019 - 2403109
Alignment:
Q  113 tgtggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactctt 204  Q
    ||||||||||||||||| |||||| ||||| |||| |||||| ||||||||||||||||| || ||||| ||||||||||||||||||||||    
T  2403019 tgtggggggaccacaagaacacttttcaaaattgtgtgtggg-tgtacaagtggtacatgccatctaagatggtctatgtatcactactctt 2403109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 1995034 - 1994953
Alignment:
Q  120 ggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    ||||||||| ||||||| ||||| |||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  1995034 ggaccacaaagacacttgtcaaaattgtgtgtggg-tgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 1994953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 113 - 198
Target Start/End: Original strand, 29637304 - 29637388
Alignment:
Q  113 tgtggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcact 198  Q
    |||||| ||||||||||||||||| ||||| |||| |||||| ||||||||||||||||| |||||||| ||||||||||||||||    
T  29637304 tgtgggaggaccacaaggacacttgtcaaaattgtgtgtggg-tgtacaagtggtacatgccacctaagatggtctatgtatcact 29637388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 43740407 - 43740506
Alignment:
Q  1 aagagagacaaagtgtttgtggggtctaggctacatgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgggtgtgcatgtatcaccactc 100  Q
    ||||||||||||||||||||| ||| ||||| |||| ||||||| ||||||||||||||||||||| |||  | |||||| ||| |||| ||||||||||    
T  43740407 aagagagacaaagtgtttgtgaggtttaggccacatatcacatgtttgtgtggaggtttaagtgtgcatgtgatctatggatgttcatggatcaccactc 43740506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 7178213 - 7178291
Alignment:
Q  121 gaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactac 200  Q
    |||||||  ||||||| ||| | ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  7178213 gaccacatagacacttgtcacaattgtatgtggg-tgtacaaatggtacatgtcacctaaggtggtctatgtatcactac 7178291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 527032 - 527083
Alignment:
Q  153 gggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactctt 204  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  527032 gggtgtataagtggtacatgccacctaaggtggtctatgtatcactactctt 527083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 9673004 - 9673062
Alignment:
Q  36 tgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgggtgtgcatgtatca 94  Q
    ||||||||| || |||||||||||||||||||||||||||||| ||||| |||||||||    
T  9673004 tgtcacatgtttatgtggaggtttaagtgtgtatgccacctataggtgtacatgtatca 9673062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 32267566 - 32267647
Alignment:
Q  120 ggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    ||||||||||||||||| ||||| |||| |||||| ||||||| | ||||||| ||| |||| ||||||||||||||||||||    
T  32267566 ggaccacaaggacacttgtcaaaattgtgtgtggg-tgtacaaattgtacatgccacttaagatggtctatgtatcactactc 32267647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 40030887 - 40030838
Alignment:
Q  153 gggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  40030887 gggtgtacaagtggtacatgctacctaaggtggtctatgtatcactactc 40030838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 26041058 - 26040972
Alignment:
Q  113 tgtggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactac 200  Q
    |||| |||||||||  |||||| | ||| | ||||||||||| ||||||||||||||||| ||||||||||||| | |||||||||||    
T  26041058 tgtgtggggaccacgtggacacatgtcacaattgtatgtggg-tgtacaagtggtacatgccacctaaggtggtttgtgtatcactac 26040972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 46845789 - 46845840
Alignment:
Q  153 gggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactctt 204  Q
    ||||||| |||||||||||| || ||||||||||||||||||||||||||||    
T  46845789 gggtgtataagtggtacatgccatctaaggtggtctatgtatcactactctt 46845840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 33502658 - 33502704
Alignment:
Q  154 ggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactac 200  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||    
T  33502658 ggtgtacaagtggtacatgtcatctaatgtggtctatgtatcactac 33502704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 39858396 - 39858346
Alignment:
Q  153 gggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactct 203  Q
    ||||||| |||||||| ||| ||||||||||||||||||||||||||||||    
T  39858396 gggtgtataagtggtatatgccacctaaggtggtctatgtatcactactct 39858346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 40294865 - 40294917
Alignment:
Q  154 ggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactcttgt 206  Q
    |||| ||||||||||| || ||||||| |||||||||||||||||||||||||    
T  40294865 ggtggacaagtggtacgtgccacctaaagtggtctatgtatcactactcttgt 40294917  T

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Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 49430600 - 49430648
Alignment:
Q  156 tgtacaagtggtacatgtcacctaaggtggtctatgtatcactactctt 204  Q
    |||| |||||||||||| |||||||||||||||||||||||| ||||||    
T  49430600 tgtataagtggtacatgccacctaaggtggtctatgtatcaccactctt 49430648  T

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Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 6487774 - 6487728
Alignment:
Q  156 tgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    ||||||||||||||||| |||||||  ||||||||||||||||||||    
T  6487774 tgtacaagtggtacatgccacctaaattggtctatgtatcactactc 6487728  T

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Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 13276599 - 13276645
Alignment:
Q  155 gtgtacaagtggtacatgtcacctaaggtggtctatgtatcactact 201  Q
    ||||| |||||||||||  ||||||||||||||||||||||||||||    
T  13276599 gtgtataagtggtacataccacctaaggtggtctatgtatcactact 13276645  T

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Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 15225124 - 15225170
Alignment:
Q  153 gggtgtacaagtggtacatgtcacctaaggtggtctatgtatcacta 199  Q
    ||||||| |||| ||||||| ||||||||||||||||||||||||||    
T  15225124 gggtgtataagttgtacatgccacctaaggtggtctatgtatcacta 15225170  T

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Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 200
Target Start/End: Original strand, 47571663 - 47571743
Alignment:
Q  119 gggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactac 200  Q
    ||||||||| |||||| | ||| | || |||||||| ||||||||||| | ||||||||||||||||| ||| |||||||||    
T  47571663 gggaccacatggacacatgtcacaattatatgtggg-tgtacaagtggcatatgtcacctaaggtggtttatatatcactac 47571743  T

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Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 19989318 - 19989246
Alignment:
Q  122 accacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatc 195  Q
    |||||| |||||| | ||| | ||||||||||  ||||||||||||| |||||| |||||||||| ||||||||    
T  19989318 accacatggacacatgtcacacttgtatgtgga-tgtacaagtggtatatgtcatctaaggtggtttatgtatc 19989246  T

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Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 29731270 - 29731194
Alignment:
Q  119 gggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatca 196  Q
    ||||||||| |||||| | ||| | || |||||||| ||||| ||||||| ||| ||||||||||||| |||||||||    
T  29731270 gggaccacatggacacatgtcacaattatatgtggg-tgtactagtggtatatgccacctaaggtggtttatgtatca 29731194  T

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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 13922284 - 13922185
Alignment:
Q  1 aagagagacaaagtgtttgtggggtctaggctacatgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgggtgtgcatgtatcaccactc 100  Q
    ||||||||||||||||||||||||||||||  || ||||||||| ||  ||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  13922284 aagagagacaaagtgtttgtggggtctaggacacgtgtcacatgtttacgtggaggtttaagtgtgtatgccacctatggatgtacatgtatcaccactc 13922185  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 11829055 - 11828960
Alignment:
Q  2 agagagacaaagtgtttgtggggtctaggctacatgtcacatgcttgtgtggaggtttaagtgtgtatgccacctatgggtgtgcatgtatcacca 97  Q
    |||||| ||||||||||||||||||||||  |||||||||||  || ||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  11829055 agagaggcaaagtgtttgtggggtctaggacacatgtcacatatttatgtggaggtttaagtgtgtatgccacctatgagtgtgcatgtctcacca 11828960  T

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Target: chr2; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 40095351 - 40095263
Alignment:
Q  113 tgtggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    |||||||||||||||| ||||||| ||||| ||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||    
T  40095351 tgtggggggaccacaatgacacttgtcaaaattgtatgtgga-tgtacaagtggtacatgtcatctaaggtggtctatgtatcactactc 40095263  T

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Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 13697059 - 13697146
Alignment:
Q  113 tgtggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactact 201  Q
    |||||||| ||||||||||||||| ||||| |||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  13697059 tgtgggggaaccacaaggacacttgtcaaaattgtgtgtggg-tgtacaagtggtacatgccacctaaggtggtctatgtatcactact 13697146  T

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Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 17823667 - 17823579
Alignment:
Q  113 tgtggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||  || |||||||||| |||||||||||||||    
T  17823667 tgtggggggaccacaaggacacttatcaaaattgtatgt-gggtgtacaagtgatacataccatctaaggtggtttatgtatcactactc 17823579  T

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Target: chr2; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 42061325 - 42061412
Alignment:
Q  113 tgtggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactact 201  Q
    |||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| |||| || ||| ||||||||||||||||    
T  42061325 tgtggggggaccacaaggacacttgtcaaaattgtatgt-gggtgtacaagtggtacatgccacccaaagtgctctatgtatcactact 42061412  T

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Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 203
Target Start/End: Original strand, 32599342 - 32599431
Alignment:
Q  113 tgtggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactct 203  Q
    ||||| |||||||||||||||||| ||||| || | |||||  ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32599342 tgtggagggaccacaaggacacttgtcaaaattatgtgtgga-tgtacaagtggtacatgccacctaaggtggtctatgtatcactactct 32599431  T

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Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 199
Target Start/End: Original strand, 36272755 - 36272840
Alignment:
Q  113 tgtggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcacta 199  Q
    |||| ||||||||||||||||||| ||||| |||| |||||| |||| |||||||||||| ||||||||||||||||||||||||||    
T  36272755 tgtgtggggaccacaaggacacttgtcaaaattgtgtgtggg-tgtataagtggtacatgccacctaaggtggtctatgtatcacta 36272840  T

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Target: chr2; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 113 - 203
Target Start/End: Original strand, 23860258 - 23860347
Alignment:
Q  113 tgtggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactct 203  Q
    |||||||||| |||||| |||||| ||||| | || |||| | | ||||||||||||||| ||||||||||||||||||||||||||||||    
T  23860258 tgtggggggatcacaagaacacttgtcaaaatagtgtgtgag-tatacaagtggtacatgccacctaaggtggtctatgtatcactactct 23860347  T

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Target: chr2; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 113 - 203
Target Start/End: Original strand, 33555457 - 33555546
Alignment:
Q  113 tgtggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactct 203  Q
    |||||||||||||||| ||||||| ||||| |||| |||  | ||||||||||||||||| ||| ||||||| ||||||||||||||||||    
T  33555457 tgtggggggaccacaatgacacttgtcaaaattgtgtgtaag-tgtacaagtggtacatgccacttaaggtgatctatgtatcactactct 33555546  T

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Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 14945869 - 14945918
Alignment:
Q  153 gggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactc 202  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14945869 gggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 14945918  T

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Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 203
Target Start/End: Original strand, 36709285 - 36709374
Alignment:
Q  113 tgtggggggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactct 203  Q
    |||||||||||||||| |||| || ||||| |||| |||||| |||| |||||||||||  |||||||| |||||||||||||| ||||||    
T  36709285 tgtggggggaccacaatgacatttgtcaaaattgtgtgtggg-tgtataagtggtacataccacctaagatggtctatgtatcagtactct 36709374  T

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Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 3121657 - 3121607
Alignment:
Q  155 gtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactcttg 205  Q
    ||||| |||||||||||| || |||||||||||||||||||||||||||||    
T  3121657 gtgtataagtggtacatgccatctaaggtggtctatgtatcactactcttg 3121607  T

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Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 14242627 - 14242699
Alignment:
Q  131 acacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactctt 204  Q
    |||||| ||||| |||| |||||| |||||| |||||||||  |||||||| ||||||||||||||||||||||    
T  14242627 acacttgtcaaaattgtgtgtggg-tgtacaggtggtacataccacctaagatggtctatgtatcactactctt 14242699  T

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Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 4434727 - 4434774
Alignment:
Q  157 gtacaagtggtacatgtcacctaaggtggtctatgtatcactactctt 204  Q
    |||||||||||||||| ||| ||||||||||||| |||||||||||||    
T  4434727 gtacaagtggtacatgccacataaggtggtctatatatcactactctt 4434774  T

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Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 33300028 - 33299978
Alignment:
Q  153 gggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactct 203  Q
    ||||||| || ||||||||| ||| ||||||||||||||||||||||||||    
T  33300028 gggtgtataaatggtacatgccacttaaggtggtctatgtatcactactct 33299978  T

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Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 24475834 - 24475885
Alignment:
Q  153 gggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactctt 204  Q
    ||||||| ||||| |||||  ||||||||||||||||||||||| |||||||    
T  24475834 gggtgtataagtgatacataccacctaaggtggtctatgtatcattactctt 24475885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 40216491 - 40216411
Alignment:
Q  119 gggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactac 200  Q
    ||||||||| |||||| | ||| | || |||||||| ||||||||||||| || ||| |||||||||| ||| |||||||||    
T  40216491 gggaccacatggacacatgtcacaattatatgtggg-tgtacaagtggtatatatcatctaaggtggtttatatatcactac 40216411  T

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Target: scaffold0533 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 10332 - 10415
Alignment:
Q  120 ggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtctatgtatcactactctt 204  Q
    ||||||||||||||||| ||||| || ||||||   | ||||||| ||||||||||||||||||||||||||||| |||||||||    
T  10332 ggaccacaaggacacttgtcaaaattatatgtgaa-tatacaagtagtacatgtcacctaaggtggtctatgtattactactctt 10415  T

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Target: scaffold0933 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 3153 - 3231
Alignment:
Q  119 gggaccacaaggacacttatcaaagttgtatgtggggtgtacaagtggtacatgtcacctaaggtggtc-tatgtatcac 197  Q
    ||||| |||||||||||| ||||| |||||||| |||||||||| |||||||||||| ||||| ||||| ||||||||||    
T  3153 gggactacaaggacacttgtcaaaattgtatgt-gggtgtacaaatggtacatgtcatctaagatggtcttatgtatcac 3231  T

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Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 202
Target Start/End: Complemental strand, 52877 - 52843
Alignment:
Q  168 acatgtcacctaaggtggtctatgtatcactactc 202  Q
    |||||||||||||||||||||||||||||||||||    
T  52877 acatgtcacctaaggtggtctatgtatcactactc 52843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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