View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16423_high_5 (Length: 327)
Name: NF16423_high_5
Description: NF16423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16423_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 105 - 313
Target Start/End: Original strand, 3411389 - 3411598
Alignment:
| Q |
105 |
aactgaattttaagattgaaaattgaatttgaatgtcccactcaatttactcgcgattcactttaatctctgatacaaaataaaactcaaattaatccat |
204 |
Q |
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| T |
3411389 |
aactgaattttaagagtgaaaattgaatttgaatgtcccactcaatttactcacgattcactttaatctctgatacaaaataaaactcaaattaatccat |
3411488 |
T |
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| Q |
205 |
gttattttcatattatgaacaaattaattcatgttataataagttgaagactatattttttacaagttaaagactaatttgaatatta-ttttttattag |
303 |
Q |
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| T |
3411489 |
gttattttcatattatgaacaaattaattcatgttataataagttgaagactatatttttgacaagttagagactaatttgagtattatttttttattag |
3411588 |
T |
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| Q |
304 |
agattaaatt |
313 |
Q |
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|||||||||| |
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| T |
3411589 |
agattaaatt |
3411598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 37990205 - 37990254
Alignment:
| Q |
181 |
aaaataaaactcaaattaatccatgttattttcatattatgaacaaatta |
230 |
Q |
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||||||||| | ||||| |||| || |||||||||||||||||||||||| |
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| T |
37990205 |
aaaataaaatttaaattgatccctgatattttcatattatgaacaaatta |
37990254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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