View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16423_high_6 (Length: 326)
Name: NF16423_high_6
Description: NF16423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16423_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 117 - 310
Target Start/End: Complemental strand, 10503305 - 10503112
Alignment:
| Q |
117 |
aactttagttaaggctgcaaagaagacgaggatnnnnnnnttggagagaaattcagaaaatggcgagtcttttgatacattttggattggtgaaactaaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10503305 |
aactttagttaaggctgcaaagaagacgaggataaaaaaattggagagaaattcagaaaatggcgagtcttttgatacattttggattggtgaaactaaa |
10503206 |
T |
|
| Q |
217 |
ttgcctttggctccaacgattagaacacaacctgttcttgagaatgattgatgatgtttttcattattaatgttagttagtggtggttcaattt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10503205 |
ttgcctttggctccaacgattagaacacaacctgttcttgagaatgattgatgatgtttttcattattaatgttagttaatggtggttcaattt |
10503112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 10503421 - 10503368
Alignment:
| Q |
1 |
gttccaattccaaaagaattatacaacaagagacaaagtaagagatttaccata |
54 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10503421 |
gttccaattccaaaagaattatacaataagagacaaagtaagagatttaccata |
10503368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University