View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16423_low_1 (Length: 771)
Name: NF16423_low_1
Description: NF16423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16423_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 666; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 666; E-Value: 0
Query Start/End: Original strand, 11 - 756
Target Start/End: Original strand, 20015178 - 20015923
Alignment:
| Q |
11 |
cataggtttccacgtccaactttagacctgaactactaatctccgtcaccaatagagtagcctccgcagttcgattctctttgcagtaagccttcaagat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20015178 |
cataggtttccacgtccaactttagacctgaactactaatctcggtcaccaatagactagcctccgcagttcgattctctttgcagtaagccttcaagat |
20015277 |
T |
|
| Q |
111 |
cggcacatagaccccaagacccacagagcctcccaaagcattcatctcatcaagaatactatgcgctttgtctgataatccaatactaacacaagcatta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20015278 |
cggcacatagaccccaagacccacagagcctcccaaagcattcatctcatcaagaatactatgcgctttgtctgataatccaatactaacacaagcatta |
20015377 |
T |
|
| Q |
211 |
acaataccaaaacctatagactcgtcaactttgatattcgaagactccaatttctgagcttcaagaatcaaattagctaaacccttgatatttcctttct |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| | ||||||||||||||||||||| |||||||| || | |
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|
| T |
20015378 |
acaataccaaaacctatagactcgtcaactttgatattcgaagactctaatttttgagcttcgataatcaaattagctaaacccttaatatttcccttat |
20015477 |
T |
|
| Q |
311 |
gaagatattcgttaactactaaacaaaaagtgtctctatcaaaactccaaacttccccctcatcatctctatcattcaaactgctaagaattgtcgactc |
410 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20015478 |
gaagatattccttaactactaaacaaaaagtgtctctatcaaaactccaaacttccccctcatcatctctatcattcaaactgctaagaattgtcgactc |
20015577 |
T |
|
| Q |
411 |
cacagaaactaaattagcagacttaacatagccactaatcaaattagaataaaaacatttattgtttttggaataaccaaaaccaaccataaaaaatttt |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||| |||| |
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|
| T |
20015578 |
tacagaaactaaattagcagacttaacatagccactaatcaaattagaataaaaacatttattgtttttggagtagccaaaaccaaccatcaaaactttt |
20015677 |
T |
|
| Q |
511 |
aactcatctatcttatcttgtaaccctttaagtgcatataaataagcaagaaaaccaaaactaaaaacatcaggcttaacaccgagcttggacataattt |
610 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
20015678 |
aactcatctatcttatcttgtaaccctttaagtgcatataaataagcaagaaatccaaaactaaacacatcaggcttaacaccgagcttggacataattt |
20015777 |
T |
|
| Q |
611 |
caacaactctgttagcatcagttaccgattgaaggaaaaaacagcaggcttcaagagcagcattacaagaagaaacatcaggtatcataaactccagttt |
710 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
20015778 |
caacaactctgttagcatcagttaccgattgaaggcaaaaacagcaggcttcaagagcagcattacaagaagcaacatcaggtatcataaactccagttt |
20015877 |
T |
|
| Q |
711 |
ctcatcgaaagcaaccctgcagttctcttcaaaaagaggtaaaaag |
756 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
20015878 |
ctcatcgaaagcaaccctgcagttttcttcaaaaagaggtaaaaag |
20015923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 658; E-Value: 0
Query Start/End: Original strand, 11 - 756
Target Start/End: Complemental strand, 19701437 - 19700692
Alignment:
| Q |
11 |
cataggtttccacgtccaactttagacctgaactactaatctccgtcaccaatagagtagcctccgcagttcgattctctttgcagtaagccttcaagat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19701437 |
cataggtttccacgtccaactttagacctgaactactaatctcggtcaccaatagactagcctccgcagttcgattctctttgcagtaagccttcaagat |
19701338 |
T |
|
| Q |
111 |
cggcacatagaccccaagacccacagagcctcccaaagcattcatctcatcaagaatactatgcgctttgtctgataatccaatactaacacaagcatta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19701337 |
cggcacatagaccccaagacccacagagcctcccaaagcattcatctcatcaagaatattatgcgctttgtctgataatccaatactaacacaagcatta |
19701238 |
T |
|
| Q |
211 |
acaataccaaaacctatagactcgtcaactttgatattcgaagactccaatttctgagcttcaagaatcaaattagctaaacccttgatatttcctttct |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| | ||||||||||||||||||||| |||||||| || | |
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|
| T |
19701237 |
acaataccaaaacctatagactcgtcaactttgatattcgaagactctaatttttgagcttcgataatcaaattagctaaacccttaatatttcccttat |
19701138 |
T |
|
| Q |
311 |
gaagatattcgttaactactaaacaaaaagtgtctctatcaaaactccaaacttccccctcatcatctctatcattcaaactgctaagaattgtcgactc |
410 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19701137 |
gaagatattccttaactactaaacaaaaagtgtctctatcaaaactccaaacttccccctcatcatctctatcattcaaactgctaagaattgtcgactc |
19701038 |
T |
|
| Q |
411 |
cacagaaactaaattagcagacttaacatagccactaatcaaattagaataaaaacatttattgtttttggaataaccaaaaccaaccataaaaaatttt |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||| |||| |
|
|
| T |
19701037 |
tacagaaactaaattagcagacttaacatagccactaatcaaattagaataaaaacatttattgtttttggagtagccaaaaccaaccatcaaaactttt |
19700938 |
T |
|
| Q |
511 |
aactcatctatcttatcttgtaaccctttaagtgcatataaataagcaagaaaaccaaaactaaaaacatcaggcttaacaccgagcttggacataattt |
610 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
19700937 |
aactcgtctatcttatcttgtaaccctttaagtgcatataaataagcaagaaatccaaaactaaacacatcaggcttaacaccgagcttggacataattt |
19700838 |
T |
|
| Q |
611 |
caacaactctgttagcatcagttaccgattgaaggaaaaaacagcaggcttcaagagcagcattacaagaagaaacatcaggtatcataaactccagttt |
710 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19700837 |
caacaactctgttagcatcagttaccgattgaaggcaaaaacagcaggcttcaagagcagcattacaagaagcaacatcaggtatcataaactccagttt |
19700738 |
T |
|
| Q |
711 |
ctcatcgaaagcaaccctgcagttctcttcaaaaagaggtaaaaag |
756 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19700737 |
ctcatcgaaagcaaccctgcagttttcttcaaaaagaggtaaaaag |
19700692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 655 - 756
Target Start/End: Complemental strand, 24464928 - 24464827
Alignment:
| Q |
655 |
caggcttcaagagcagcattacaagaagaaacatcaggtatcataaactccagtttctcatcgaaagcaaccctgcagttctcttcaaaaagaggtaaaa |
754 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24464928 |
caggcttgaagagcagcattacaagcagaaacatcaggtatcataaagtccagcttgtcatcgaaagcaaccctgcagttctcttcaaaaagaggtaaaa |
24464829 |
T |
|
| Q |
755 |
ag |
756 |
Q |
| |
|
|| |
|
|
| T |
24464828 |
ag |
24464827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 513 - 631
Target Start/End: Complemental strand, 24465048 - 24464926
Alignment:
| Q |
513 |
ctcatctatcttatcttgtaaccctttaagtgc----atataaataagcaagaaaaccaaaactaaaaacatcaggcttaacaccgagcttggacataat |
608 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||| ||||||||||| ||||| | |||||| |
|
|
| T |
24465048 |
ctcatctatcttatcttgtaaccctttaagtgcgtgcatataaataagcaagaaatccaaaactaaactcatctggcttaacaccaagctttgtcataat |
24464949 |
T |
|
| Q |
609 |
ttcaacaactctgttagcatcag |
631 |
Q |
| |
|
| ||| |||||||| |||||||| |
|
|
| T |
24464948 |
tccaataactctgtcagcatcag |
24464926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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