View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16423_low_13 (Length: 238)
Name: NF16423_low_13
Description: NF16423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16423_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 43961415 - 43961622
Alignment:
| Q |
17 |
atttttgtttctgacatatggttgtttatcacattaggcatgggttgctcacaaggaagctaattggatcagcttaattctatggataatttcatttatc |
116 |
Q |
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| T |
43961415 |
atttttgtttctgacatatggttgtttatcacattaggcatgggttgctcacaaggaagctaattggatcagcttaattctatggataatttcatttatc |
43961514 |
T |
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| Q |
117 |
ttccttggaaggtattattttttctcatcaagaaacttctttcagcaggatgatgtatatttcttgcctttgatatttttccaatttttattacattgtt |
216 |
Q |
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| T |
43961515 |
ttccttggaaggtattattttttctcatcaagaaacttctttcagcaggatgatgtatatttcttgcctttgatatttttccaatttttattacattgtt |
43961614 |
T |
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| Q |
217 |
ctcctatg |
224 |
Q |
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| T |
43961615 |
ctcttatg |
43961622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 137
Target Start/End: Original strand, 43954670 - 43954740
Alignment:
| Q |
67 |
acaaggaagctaattggatcagcttaattctatggataatttcatttatcttccttggaaggtattatttt |
137 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| | ||||| |||||||||||||| |||| |
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| T |
43954670 |
acaaggaagctaattggatcagctcgattctatggataattttacttatcggccttggaaggtattgtttt |
43954740 |
T |
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