View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16423_low_14 (Length: 225)
Name: NF16423_low_14
Description: NF16423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16423_low_14 |
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| [»] scaffold0421 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 15930308 - 15930501
Alignment:
| Q |
13 |
gaagaatattgacaggaaagaatatagagaaagagttttgtaaaaatatattgaatatgaagcccgtaagtcttcgatgtaggatgaaatagatggaaaa |
112 |
Q |
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| T |
15930308 |
gaagaatatagataggaaagaatatagagaaagagttttgtaaaaatatattgaatatgaagcccataagtcttcgatgtaggatgaaatagatggaaaa |
15930407 |
T |
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| Q |
113 |
caaatatcttgtcaactgcaaatggaatcatgaaattaaattaaatttagtggtttgtttcacataaggctctaaaaggatggatagtcaagaa |
206 |
Q |
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| T |
15930408 |
caaatatcttgtcaattgcaaatggaatcatgaaattaaattaaatttagtggtttgtttcacataaggctctaaaaggatggatagtcaagaa |
15930501 |
T |
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Target: scaffold0421 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 5251 - 5058
Alignment:
| Q |
13 |
gaagaatattgacaggaaagaatatagagaaagagttttgtaaaaatatattgaatatgaagcccgtaagtcttcgatgtaggatgaaatagatggaaaa |
112 |
Q |
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||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5251 |
gaagaatatagataggaaagaatatagagaatgagttttgtaaaaatatattgaatatgaagcccataagtcttcgatgtaggatgaaatagatggaaaa |
5152 |
T |
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| Q |
113 |
caaatatcttgtcaactgcaaatggaatcatgaaattaaattaaatttagtggtttgtttcacataaggctctaaaaggatggatagtcaagaa |
206 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5151 |
caaatatcttgtcaattgcaaatggaatcatgaaattaaattaaatttagtggtttgtttcacataaggctctaaaaggatggatagtcaagaa |
5058 |
T |
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