View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16423_low_2 (Length: 502)

Name: NF16423_low_2
Description: NF16423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16423_low_2
NF16423_low_2
[»] chr6 (1 HSPs)
chr6 (17-481)||(26463517-26463980)
[»] chr1 (4 HSPs)
chr1 (291-481)||(31197398-31197591)
chr1 (17-90)||(31197650-31197723)
chr1 (21-133)||(34051978-34052090)
chr1 (17-133)||(15237149-15237265)
[»] chr7 (3 HSPs)
chr7 (17-174)||(49041813-49041969)
chr7 (273-311)||(29143806-29143844)
chr7 (283-311)||(47558608-47558636)
[»] chr4 (2 HSPs)
chr4 (174-257)||(48062831-48062917)
chr4 (273-311)||(55866928-55866966)
[»] chr8 (1 HSPs)
chr8 (375-461)||(28537093-28537179)


Alignment Details
Target: chr6 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 17 - 481
Target Start/End: Complemental strand, 26463980 - 26463517
Alignment:
Q  17 aagaccagcactacaacccatacctccaagattatagcttttaatgtttgttcttagcttgtcatggttcacaatcattgcagaaacggaaggagttggg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26463980 aagaccagcactacaacccatacctccaagattatagcttttaatgtttgttcttagcttgtcatggttcacaatcattgcagaaagggaaggagttggg 26463881  T
Q  117 ttatacaaactacaattttacaacaaggatgtcaatgtctcttgaattaacacatgttatcaaaccattacaacatggtttctgtctgctaagaaatgta 216  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26463880 ttatacaaactacaattt-acaacaaggatgtcaatgtctcttgaattaacacatgttatcaaaccattacaacatggtttctgtctgctaagaaatgta 26463782  T
Q  217 attcaagttttcatgtgttgctagttgatacttgtacataccttcgccatcgtaccttcgccgtcgacaagaacaacaaaaacaacgcacacaagatgtt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26463781 attcaagttttcatgtgttgctagttgatacttgtacataccttcgccatcgtaccttcgccgtcgacaagaacaacaaaaacaacgcacacaagatgtt 26463682  T
Q  317 atagtcaattgtggttcattgatttattgaaagttttgtcttaattttgattcattgaaagtgttatgaatggaagggaatgagagaagaagccatgagt 416  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26463681 atagtcaattgcggttcattgatttattgaaagttttgtcttaattttgattcattgaaagtgttatgaatggaagggaatgagagaagaagccatgagt 26463582  T
Q  417 gtgtttctaaaggttttttattttgaacctgattctcttgaagctaaaaatggtgttattgagtt 481  Q
     ||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||    
T  26463581 atgtttctaaaggtttttgattttgaacatgattctcttgaagctaagaatggtgttattgagtt 26463517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 164; Significance: 2e-87; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 291 - 481
Target Start/End: Complemental strand, 31197591 - 31197398
Alignment:
Q  291 aacaaaaacaacgcacacaagatgttatagtcaattgtggttcattgatttattgaaagttttgtcttaattttgattcattgaaagtgttatgaatgga 390  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31197591 aacaaaaacaacgcacacaagatgttatagtcaattgcggttcattgattcattgaaagttttgtcttaattttgattcattgaaagtgttatgaatgga 31197492  T
Q  391 agggaatgagagaagaagccatgagtgtgtttctaaaggttttttattttgaac---ctgattctcttgaagctaaaaatggtgttattgagtt 481  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||   ||||||||||| |||||||||||||||||||||||||    
T  31197491 agggaatgagagaagaagccatgagtgtgtttctaaaggtttttgattttgaacctgctgattctcttaaagctaaaaatggtgttattgagtt 31197398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 31197723 - 31197650
Alignment:
Q  17 aagaccagcactacaacccatacctccaagattatagcttttaatgtttgttcttagcttgtcatggttcacaa 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  31197723 aagaccagcactacaacccatacctccaagattatagcttttaatgtttgttcttagcttgtaatgattcacaa 31197650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 34052090 - 34051978
Alignment:
Q  21 ccagcactacaacccatacctccaagattatagcttttaatgtttgttcttagcttgtcatggttcacaatcattgcagaaacggaaggagttgggttat 120  Q
    |||||||||||||||||||| ||||||||||| |||| ||  ||   ||||| ||| | ||| ||||||||||| |||||||  ||||| || || |||     
T  34052090 ccagcactacaacccataccaccaagattataactttgaacattccctcttaacttataatgattcacaatcatagcagaaagagaaggtgtaggattaa 34051991  T
Q  121 acaaactacaatt 133  Q
    |||||||||||||    
T  34051990 acaaactacaatt 34051978  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 15237265 - 15237149
Alignment:
Q  17 aagaccagcactacaacccatacctccaagattatagcttttaatgtttgttcttagcttgtcatggttcacaatcattgcagaaacggaaggagttggg 116  Q
    |||||||||||||||||||||||| ||||||||||| ||    || |||  ||| | ||| | ||| ||||||||||| |||||||  || || |||||     
T  15237265 aagaccagcactacaacccataccaccaagattataactcaagatatttcctctcaacttataatgattcacaatcatggcagaaagagatggtgttgga 15237166  T
Q  117 ttatacaaactacaatt 133  Q
    ||| |||||||||||||    
T  15237165 ttaaacaaactacaatt 15237149  T

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Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 49041813 - 49041969
Alignment:
Q  17 aagaccagcactacaacccatacctccaagattatagcttttaatgtttgttcttagcttgtcatggttcacaatcattgcagaaacggaaggagttggg 116  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||  ||||||||||||    
T  49041813 aagaccagcactacaacccatacctccgagattatagcttttaatgtttgttctaagcttgtaatggttcacaatcattgcagaaagtgaaggagttggg 49041912  T
Q  117 ttatacaaactacaattttacaacaaggatgtcaatgtctcttgaattaacacatgtt 174  Q
    ||| ||||||||||| ||||||||||| |||||||||||||||| |||||||| ||||    
T  49041913 ttaaacaaactacaa-tttacaacaagaatgtcaatgtctcttggattaacacctgtt 49041969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 273 - 311
Target Start/End: Original strand, 29143806 - 29143844
Alignment:
Q  273 ttcgccgtcgacaagaacaacaaaaacaacgcacacaag 311  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29143806 ttcgccgtcgacaagaacaacaaaaacaacgcacacaag 29143844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 311
Target Start/End: Complemental strand, 47558636 - 47558608
Alignment:
Q  283 acaagaacaacaaaaacaacgcacacaag 311  Q
    |||||||||||||||||||||||||||||    
T  47558636 acaagaacaacaaaaacaacgcacacaag 47558608  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 174 - 257
Target Start/End: Complemental strand, 48062917 - 48062831
Alignment:
Q  174 tatcaaaccattacaacatggtttctgtctgctaagaaatgta---attcaagttttcatgtgttgctagttgatacttgtacatac 257  Q
    ||||||||||| |  |||||| |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  48062917 tatcaaaccatgatgacatggcttctgtctgctaagaaatgtacagattcaagttttcatgtgttgctagttgatacttgtacatac 48062831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 311
Target Start/End: Complemental strand, 55866966 - 55866928
Alignment:
Q  273 ttcgccgtcgacaagaacaacaaaaacaacgcacacaag 311  Q
    ||||| ||||||||||||||||||| |||||||||||||    
T  55866966 ttcgcagtcgacaagaacaacaaaatcaacgcacacaag 55866928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 375 - 461
Target Start/End: Original strand, 28537093 - 28537179
Alignment:
Q  375 aagtgttatgaatggaagggaatgagagaagaagccatgagtgtgtttctaaaggttttttattttgaacctgattctcttgaagct 461  Q
    ||||||||||||||||| || |||||||||||||| | || ||||||||  |||||| |  ||||||||||||||||| ||||||||    
T  28537093 aagtgttatgaatggaaagggatgagagaagaagcgaagaatgtgtttcagaaggttctggattttgaacctgattctgttgaagct 28537179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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