View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16424_high_13 (Length: 249)
Name: NF16424_high_13
Description: NF16424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16424_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 8692035 - 8692273
Alignment:
| Q |
1 |
tcttctaaaattttacagtgtcacaatgttctggatacttcaacggcgtttcttgagcatcctagctcaagcgaatactatgcatcatttcgaaatgatt |
100 |
Q |
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| T |
8692035 |
tcttctaaaattttacagtgtcgcaatgttctggatacttcaacggcgtttcttgagcatcctagctcaagcgaatactatgcatcatttcgaaatgatt |
8692134 |
T |
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| Q |
101 |
tcgggggattggaggcatcctcttgtgactcatctgcagataaacctctagagatgatcaattgttttgaaatttctagtgcaccttccactctaagaag |
200 |
Q |
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| T |
8692135 |
tcgggggattggaggcatcctcttgtgactcatctgcagataaacctctagagatgatcaattgttttgaaatttctagtgcaccttccactctaagaag |
8692234 |
T |
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| Q |
201 |
aaacaaaaaccagtatcatccaagaccagccaccttcat |
239 |
Q |
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| T |
8692235 |
aaacaaaaaccagtatcatccaagaccagccaccttcat |
8692273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 6 - 239
Target Start/End: Complemental strand, 14384714 - 14384481
Alignment:
| Q |
6 |
taaaattttacagtgtcacaatgttctggatacttcaacggcgtttcttgagcatcctagctcaagcgaatactatgcatcatttcgaaatgatttcggg |
105 |
Q |
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| T |
14384714 |
taaaattttacagtatggcaatgttctggatacttcaacggcttttcttgaacatcctagttcaggcgaatactatgcatcatttcgagatgatttcggg |
14384615 |
T |
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| Q |
106 |
ggattggaggcatcctcttgtgactcatctgcagataaacctctagagatgatcaattgttttgaaatttctagtgcaccttccactctaagaagaaaca |
205 |
Q |
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| T |
14384614 |
ggattggaggcatcctcttgtgactcaactgcagataaacctcaaaagatgatcaattgttatgaaatttccagtgcaccttccactctaagaagaaaca |
14384515 |
T |
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| Q |
206 |
aaaaccagtatcatccaagaccagccaccttcat |
239 |
Q |
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| T |
14384514 |
aaaaccagtatcatccaagaccagccaccttcat |
14384481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 98 - 239
Target Start/End: Original strand, 8706997 - 8707138
Alignment:
| Q |
98 |
atttcgggggattggaggcatcctcttgtgactcatctgcagataaacctctagagatgatcaattgttttgaaatttctagtgcaccttccactctaag |
197 |
Q |
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|||| |||||||| ||||||||||||||||| ||| ||||||||| |||| | ||||||||||||||| || |||| |||||| | |||||||||||||| |
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| T |
8706997 |
attttgggggattagaggcatcctcttgtgattcaactgcagatatacctttggagatgatcaattgtattaaaatatctagttcgccttccactctaag |
8707096 |
T |
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| Q |
198 |
aagaaacaaaaaccagtatcatccaagaccagccaccttcat |
239 |
Q |
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| T |
8707097 |
aaaacacaaaaaccagtatcatccaagaccagccatcttcat |
8707138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 8706807 - 8706893
Alignment:
| Q |
1 |
tcttctaaaattttacagtgtcacaatgttctggatacttcaacggcgtttcttgagcatcctagctcaagcgaatactatgcatca |
87 |
Q |
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||||||| ||||||||||||| | || |||| |||||||||||||| |||||||| |||||||| ||| ||||||||| ||||||| |
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| T |
8706807 |
tcttctacaattttacagtgtggcgatattcttgatacttcaacggcatttcttgaacatcctagttcaggcgaatactgtgcatca |
8706893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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