View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16424_high_15 (Length: 208)

Name: NF16424_high_15
Description: NF16424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16424_high_15
NF16424_high_15
[»] chr7 (1 HSPs)
chr7 (1-192)||(9238202-9238394)
[»] chr3 (2 HSPs)
chr3 (45-192)||(13851983-13852131)
chr3 (96-167)||(1658577-1658648)
[»] chr6 (4 HSPs)
chr6 (1-180)||(11946912-11947109)
chr6 (115-192)||(14415840-14415917)
chr6 (96-167)||(14666858-14666929)
chr6 (96-150)||(17715835-17715889)
[»] chr8 (3 HSPs)
chr8 (1-192)||(28244856-28245032)
chr8 (96-167)||(45349451-45349522)
chr8 (96-167)||(17629879-17629950)


Alignment Details
Target: chr7 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 9238394 - 9238202
Alignment:
Q  1 tgcgtgacggtggagcttgacggtggttctgacagaagctcgacggtggttgagaatgagaatc-gtgagaatgcgtgagaagctcgacggaatgagaaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9238394 tgcgtgacggtggagcttgacggtggttctgacagaagctcgacggtggttgagaatgagaatccgtgagaatgcgtgagaagctcgacggaatgagaaa 9238295  T
Q  100 ttcgtcggtgaagcttgacggtggttgatggtgtgagcgtgacggtggtcgaaggtgtgcgacggtggtgaagcttgacgggggttctgctga 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||    
T  9238294 ttcgtcggtgaagcttgacggtggttgatggtgtgagcgtgacggtggtcgaaggtgtgcaacgttggtgaagcttgacggtggttctgctga 9238202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 45 - 192
Target Start/End: Original strand, 13851983 - 13852131
Alignment:
Q  45 ggtggttgagaatgagaatc-gtgagaatgcgtgagaagctcgacggaatgagaaattcgtcggtgaagcttgacggtggttgatggtgtgagcgtgacg 143  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13851983 ggtggttgagaatgagaatccgtgagaatgcgtgagaagctcgacggaatgagaaattcgtcggtgaagcttgacgatggttgatggtgtgagcgtgacg 13852082  T
Q  144 gtggtcgaaggtgtgcgacggtggtgaagcttgacgggggttctgctga 192  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||    
T  13852083 gtggtcgaagatgtgcgacggtggtgaagcttgacggtggttctgctga 13852131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 1658577 - 1658648
Alignment:
Q  96 gaaattcgtcggtgaagcttgacggtggttgatggtgtgagcgtgacggtggtcgaaggtgtgcgacggtgg 167  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1658577 gaaattcgtcggtgaagcttaacggtggtcgatggtgtgagcgtgacggtggtcgaaggtgtgcgacggtgg 1658648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 11947109 - 11946912
Alignment:
Q  1 tgcgtgacggtggagcttgacggtggttctgacagaagctcgacggtggttgagaatgagaatc-gtgagaatgcgtgagaagct--------------- 84  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||                   
T  11947109 tgcgtgacggtggagcttcacggtggttctgacagaagctcgacggtggttgggaatgagaatccgtgagaatgcgtgagaagcttgacggaatgagaag 11947010  T
Q  85 --cgacggaatgagaaattcgtcggtgaagcttgacggtggttgatggtgtgagcgtgacggtggtcgaaggtgtgcgacggtggtgaagcttgacgg 180  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11947009 ctcgacggaatgagaaattcgtcggtgaagcttgacggtggttgatggtgtgagcgtgacggtggtcgaaggtgtgcgacggtggtgaagcttgacgg 11946912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 14415840 - 14415917
Alignment:
Q  115 tgacggtggttgatggtgtgagcgtgacggtggtcgaaggtgtgcgacggtggtgaagcttgacgggggttctgctga 192  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  14415840 tgacggtggttgatggtgtgagcgtgacggtggttgaaggtgtgcgacggtggtgaagcttgacggtggttctgctga 14415917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 14666929 - 14666858
Alignment:
Q  96 gaaattcgtcggtgaagcttgacggtggttgatggtgtgagcgtgacggtggtcgaaggtgtgcgacggtgg 167  Q
    |||||||||||||||| |||||||||||| |||||||||||| ||| ||||||| | |||||||||| ||||    
T  14666929 gaaattcgtcggtgaaacttgacggtggtcgatggtgtgagcatgatggtggtcaagggtgtgcgacagtgg 14666858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 17715889 - 17715835
Alignment:
Q  96 gaaattcgtcggtgaagcttgacggtggttgatggtgtgagcgtgacggtggtcg 150  Q
    |||||||||||||||| |||||||||||| |||||||||||| ||||||||||||    
T  17715889 gaaattcgtcggtgaaacttgacggtggtcgatggtgtgagcatgacggtggtcg 17715835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 5e-58; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 28245032 - 28244856
Alignment:
Q  1 tgcgtgacggtggagcttgacggtggttctgacagaagctcgacggtggttgagaatgagaatcgtgagaatgcgtgagaagctcgacggaatgagaaat 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||               ||||||||||||||| |||||| ||||    
T  28245032 tgcgtgacggtggagcttgacggtggttctgacagaagttcgacggtggttgagaatg---------------cgtgagaagctcgacagaatgacaaat 28244948  T
Q  101 tcgtcggtgaagcttgacggtggttgatggtgtgagcgtgacggtggtcgaaggtgtgcgacggtggtgaagcttgacgggggttctgctga 192  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  28244947 tcgtcggtgaagcttgatggtggttgatggtgtgagcgtgtcggtggtcgaaggtgtgcgatggtggtgaagcttgacggtggttctgctga 28244856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 45349522 - 45349451
Alignment:
Q  96 gaaattcgtcggtgaagcttgacggtggttgatggtgtgagcgtgacggtggtcgaaggtgtgcgacggtgg 167  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  45349522 gaaattcgtcggtgaagtttgacggtggtcgatggtgtgagcgtgacggtggtcgaaggtgtgcgacggtgg 45349451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 17629950 - 17629879
Alignment:
Q  96 gaaattcgtcggtgaagcttgacggtggttgatggtgtgagcgtgacggtggtcgaagg-tgtgcgacggtgg 167  Q
    ||||||||||||||||||| |||| |||| || ||||||||||||||||||||||| ||  ||||||||||||    
T  17629950 gaaattcgtcggtgaagctcgacg-tggtcgagggtgtgagcgtgacggtggtcgagggaagtgcgacggtgg 17629879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University