View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16424_high_6 (Length: 405)
Name: NF16424_high_6
Description: NF16424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16424_high_6 |
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| [»] scaffold0008 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 388
Target Start/End: Original strand, 19327059 - 19327431
Alignment:
| Q |
8 |
agattattctgtgcacaatgtaaggtctcgtggcatgatgggatcgtgtgcagcgaatttcagaagctgaatgcggatgagagagggaagaatgatatta |
107 |
Q |
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| T |
19327059 |
agattgttctgtgcacaatgtaaggtctcgtggcatgatgggatcgggtgtagcgaatttcagaagctgaatgcggatgagagagggaagaatgatatta |
19327158 |
T |
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| Q |
108 |
tgttgatgaaacttgctaaggaaaagcagtggaaacgttgtccgaattgtaagtactatgtcgctaagtccgagggttgcttgtacatgaaatgcaggta |
207 |
Q |
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| T |
19327159 |
tgttgatgaaacttgctaaggaaaagcagtggaaaaggtgtccgaattgtaagtattatgttgctaagtccgagggttgcttgtacatgaaatgcaggta |
19327258 |
T |
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| Q |
208 |
cttgtcttccatt-ctagtactcttgctactgttattattgatatttacgtgttagttat-atggttttgtgttatacttgttgtattatactgtatgtg |
305 |
Q |
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| T |
19327259 |
cttgtctttcattactagt-------ctacagttattatcgatatctacgtgttagttataagggttttgtgttatac---ttgtattatactgtatgtg |
19327348 |
T |
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| Q |
306 |
tgtttgtatcggggcttcatagttttgtttggtgcgttcgatttttaaaatggagctattatgccgagggttatgtttaactt |
388 |
Q |
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| T |
19327349 |
tgtttgtgtatgtgcttcgtagttttgtttggtgcgttcgatttttaaaatggagctattatgctgaggattatgtttaactt |
19327431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 19270664 - 19270787
Alignment:
| Q |
17 |
tgtgcacaatgtaaggtctcgtggcatgatgggatcgtgtgcagcgaatttcagaagctgaatgcggatgagag-agggaagaatgatattatgttgatg |
115 |
Q |
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| T |
19270664 |
tgtgcaaaatgtaaggttccatggcatgaaggaatcgaatgcagcgagtttgagaagctgaacgcggacgagaggaagaaagaa-gatgttatgttgatg |
19270762 |
T |
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| Q |
116 |
aaacttgctaaggaaaagcagtgga |
140 |
Q |
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| T |
19270763 |
cgccttgctaaggataagaagtgga |
19270787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 59 - 188
Target Start/End: Original strand, 6606 - 6735
Alignment:
| Q |
59 |
agcgaatttcagaagctgaatgcggatgagagagggaagaatgatattatgttgatgaaacttgctaaggaaaagcagtggaaacgttgtccgaattgta |
158 |
Q |
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| T |
6606 |
agcgagtttcagaagctgaatgctgatgagagaggaaaatatgatgttatgttgaagaaacatgctaaggatcagaagtggagacggtgtccgaattgta |
6705 |
T |
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| Q |
159 |
agtactatgtcgctaagtccgagggttgct |
188 |
Q |
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| T |
6706 |
ggttttatgtcgctaagtccgagggttgct |
6735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 183
Target Start/End: Original strand, 17368 - 17483
Alignment:
| Q |
67 |
tcagaagctgaatgcggatgagagagggaagaatgatattatgttgatgaaacttgctaaggaaaagcagtggaaacgttgtccgaattgtaagtactat |
166 |
Q |
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| T |
17368 |
tcagaagctgaatgctgatgagagaggaaaatatgatgttatgttgaagaaacatgctaagtatcacaagtggagacggtgtccaaattgtaggt-ttat |
17466 |
T |
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| Q |
167 |
gtcgctaagtccgaggg |
183 |
Q |
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| T |
17467 |
gtcgctaagtccgaggg |
17483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 59 - 188
Target Start/End: Complemental strand, 25365107 - 25364978
Alignment:
| Q |
59 |
agcgaatttcagaagctgaatgcggatgagagagggaagaatgatattatgttgatgaaacttgctaaggaaaagcagtggaaacgttgtccgaattgta |
158 |
Q |
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||||| ||||||||||||||||| ||||||||||| || ||||| ||||||||||||||| ||||||||| || |||||| || ||||| ||||||| |
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| T |
25365107 |
agcgagtttcagaagctgaatgctgatgagagaggaaaagatgatgttatgttgatgaaacatgctaaggatcagaagtggagacagtgtccaaattgta |
25365008 |
T |
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| Q |
159 |
agtactatgtcgctaagtccgagggttgct |
188 |
Q |
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| T |
25365007 |
ggttttatgtcgctaggtcggagggttgct |
25364978 |
T |
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