View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16424_low_1 (Length: 645)
Name: NF16424_low_1
Description: NF16424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16424_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 8e-72; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 407 - 560
Target Start/End: Complemental strand, 27833036 - 27832883
Alignment:
| Q |
407 |
gttgtaggaacgtcataacgcataagcctaaggagacagatgcaaaaaattatcaattccaattattatcggcaacgtacagcactgaaatcactatagt |
506 |
Q |
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| T |
27833036 |
gttgtaggaaagacataacgcataagcctaaggagacagatgcaaaaaattatcaattccaattattatcggcaacgtacagcactgaaatcactatagt |
27832937 |
T |
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| Q |
507 |
ataagcaaatcagagactctaaattgttgcctattctctcaatcaaaacagaaa |
560 |
Q |
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| T |
27832936 |
ataagcaaatcagagactctaaattgttgcctattatttcaatcaaaacagaaa |
27832883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 370 - 540
Target Start/End: Complemental strand, 27845638 - 27845468
Alignment:
| Q |
370 |
aaaaagtaacgaaaatctaactaagtaaagcttccaagttgtaggaacgtcataacgcataagcctaaggagacagatgcaaaaaattatcaattccaat |
469 |
Q |
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| T |
27845638 |
aaaatgtaacaaaactctaacgaagtaaaactactaggttgtacgaacatgataatgcataagccttggaagacaggtgcaaataaaattcaattcaaat |
27845539 |
T |
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| Q |
470 |
tattatcggcaacgtacagcactgaaatcactatagtataagcaaatcagagactctaaattgttgcctat |
540 |
Q |
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| T |
27845538 |
tattatcggcaacgtacaacactgaaatcactatagtataagcaaagcagagactttaaattgttgcctat |
27845468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 586 - 633
Target Start/End: Complemental strand, 27832877 - 27832830
Alignment:
| Q |
586 |
gaagaagcctcggattcaagaattattgtatcgatcaaagaataatct |
633 |
Q |
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| T |
27832877 |
gaagaagcctcagattcaagaattattgtatcgatcaaagaataatct |
27832830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 31871940 - 31871988
Alignment:
| Q |
125 |
tacatttacaacaaatctaaaagcaaaaatctgagcagcccatttcata |
173 |
Q |
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| T |
31871940 |
tacatttacaacaaatctaagagcaaaaatctgagcagcacatttcata |
31871988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 467 - 538
Target Start/End: Complemental strand, 27291461 - 27291390
Alignment:
| Q |
467 |
aattattatcggcaacgtacagcactgaaatcactatagtataagcaaatcagagactctaaattgttgcct |
538 |
Q |
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| T |
27291461 |
aattgttatcggcaacgtacagcactgaaatcactattgatcgagcgaatcagagactctaaattgttgcct |
27291390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 467 - 538
Target Start/End: Complemental strand, 27292052 - 27291981
Alignment:
| Q |
467 |
aattattatcggcaacgtacagcactgaaatcactatagtataagcaaatcagagactctaaattgttgcct |
538 |
Q |
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| T |
27292052 |
aattattattggcaacgtacagcactgaaatcactatcaaataaatgaatcagagactctaaattgttgcct |
27291981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 471 - 538
Target Start/End: Complemental strand, 27298825 - 27298758
Alignment:
| Q |
471 |
attatcggcaacgtacagcactgaaatcactatagtataagcaaatcagagactctaaattgttgcct |
538 |
Q |
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| T |
27298825 |
attattggcaacgtacagcactgaaatcactattaaataagtgaatcagagactctaaattgttgcct |
27298758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 467 - 538
Target Start/End: Complemental strand, 27304484 - 27304413
Alignment:
| Q |
467 |
aattattatcggcaacgtacagcactgaaatcactatagtataagcaaatcagagactctaaattgttgcct |
538 |
Q |
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| T |
27304484 |
aattattattggcaacgtacagcactgaaatcaccatcaaataagtgaatcagagactctaatttgttgcct |
27304413 |
T |
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