View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16424_low_10 (Length: 338)
Name: NF16424_low_10
Description: NF16424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16424_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 52 - 335
Target Start/End: Original strand, 1046045 - 1046333
Alignment:
| Q |
52 |
ttatgattatttaaaatttgctagaaactttgatgatgagagaacaacgaatgagtttatgttcaaagactattataagaaaacaacnnnnnnnnnnnnn |
151 |
Q |
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| T |
1046045 |
ttatgaatatttaaaatttgctagaaactttgatgatgagagaacaacgaatgagtttatgttcaaagactcttataagaaaacaactatatatatatat |
1046144 |
T |
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| Q |
152 |
ngct-----ttcaatgtaagaattagttgtgttcaaattttacttgattttatgaacatgtcaaggtttgtaaatatatgcttcttataaataaataaat |
246 |
Q |
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| T |
1046145 |
atatatagcttcaatgtaagaattagttgtgttcaaattttacttgattttatgaacatgtcaaggtttgtatatatatgcttcttataaataaataaat |
1046244 |
T |
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| Q |
247 |
gtaacccttcttattcttgttgccatattatataaatatgactatgatatgagattcattctttgttttgaattgacgtaacctatgct |
335 |
Q |
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| T |
1046245 |
gtaacccttcttattcttgttaccatattatataaatatgactatgatatgagattcattctttgttttgaattgacctaacctatgct |
1046333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 38 - 228
Target Start/End: Complemental strand, 1045917 - 1045736
Alignment:
| Q |
38 |
tttaaaactttaaattatgattatttaaaatttgctagaaactttgatgatgagagaacaacgaatgagtttatgttcaaagactattataagaaaacaa |
137 |
Q |
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| T |
1045917 |
tttaaaactttaaattatgaatatttttaatttgctataaactttgataatgagagaacaacgaaagagtttatgatcaaagactcttattagaaaacaa |
1045818 |
T |
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| Q |
138 |
cnnnnnnnnnnnnnngctttcaatgtaagaattagttgtgttcaaattttacttgattttatgaacatgtcaaggtttgtaaatatatgct |
228 |
Q |
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| T |
1045817 |
c--------tatatagc-ttcaattaaagaattatttttgttcagattttacttgattttatgaacatgtcaatgtttgtaaatatatgct |
1045736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 156 - 333
Target Start/End: Original strand, 1041756 - 1041916
Alignment:
| Q |
156 |
ttcaatgtaagaattagttgtgttcaaattttacttgattttatgaacatgtcaaggtttgtaaatatatgcttcttataaataaataaatgtaaccctt |
255 |
Q |
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| T |
1041756 |
ttcaatgtaagaattagttgtgttcaaattttacttgatttcatgaacatgtcaaggtttgtatatatatgcttctt----attaacaaatgtagccctt |
1041851 |
T |
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| Q |
256 |
cttattcttgttgccatattatataaatatgactatgatatgagattcattctttgttttgaattgacgtaacctatg |
333 |
Q |
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| T |
1041852 |
cttggt-------acat------taaatatgactatgatatgagattcattctatgttttgaattgacctaacctatg |
1041916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 1041661 - 1041742
Alignment:
| Q |
59 |
tatttaaaatttgctagaaactttga--tgatga-gagaacaacgaat--gagtttatgttcaaagactattataagaaaacaa |
137 |
Q |
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| T |
1041661 |
tatttgaaatttgctagaaactttgatttgatgatgagaacaacgaatgagagtttatattcaaagac--ttataagaaaacaa |
1041742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 1045709 - 1045667
Alignment:
| Q |
277 |
tataaatatgactatgatatgagattcattctttgttttgaattg |
321 |
Q |
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| T |
1045709 |
tataaacatgactatgatatgagattcattc--tgttttgaattg |
1045667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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