View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16424_low_11 (Length: 301)
Name: NF16424_low_11
Description: NF16424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16424_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 42932128 - 42932395
Alignment:
| Q |
19 |
gtaagtaccttgcctaataaacttttcatgtgatgcataaagtaggtgtttttctcaactaatatcaatatccattgaatgattttaggtatctatgccc |
118 |
Q |
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| T |
42932128 |
gtaagtaccttgcctaataaacttttcatgtgatgcataaagtaggtgttttcctcaactaatatcaatatccattgaatgattttaggtatctttgccc |
42932227 |
T |
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| Q |
119 |
taaagggggttgcagagaaatcaatggttatcctgcagattgttcgtaagttttaaatcatcatgtttctaattgcgtcgtgatgcttatcctgttatca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42932228 |
taaagggggttgcagagaaatcaatggttatcctgcagattgttcgtaagttttaaatcatcatgtttctaattgcgtcgtgatgcttatcctgttatca |
42932327 |
T |
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| Q |
219 |
ttttcacaataactaaagttggttgcttcatccttaatcaggtttggaactgtttctgcaaatgtgat |
286 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42932328 |
ttttaacaataactaaagtcggttgcttcatccttaatcaggtttggaactgtttctgcaaatgtgat |
42932395 |
T |
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