View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16424_low_15 (Length: 246)
Name: NF16424_low_15
Description: NF16424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16424_low_15 |
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| [»] scaffold0552 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 6715293 - 6715514
Alignment:
| Q |
1 |
acaagttgtatattagctcctaaatttcatattcgaagcagaatccatactgatataaccattaaccagccttttgggatcaacaaaattaacactaagc |
100 |
Q |
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| T |
6715293 |
acaagttgtatattagcttctaaatttaatattcgaagcagaatccatactgatataaccattaaccagccttttgggatcaacaaaattaacactaagc |
6715392 |
T |
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| Q |
101 |
aactatatgattgatacatctcagtgttaaggtttagtggaaaatagccattcttacaaattccaatctatttcttttctaagcttatcttacttttatt |
200 |
Q |
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| T |
6715393 |
aactatatgattgatacatctcagtgttaaggtttagtggaaaatacccattcttacaaattccaatctatttcttttctaagcttatcttacttttatt |
6715492 |
T |
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| Q |
201 |
ctcttgtggttttattttcttg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
6715493 |
ctcttgtggttttattttcttg |
6715514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 42 - 222
Target Start/End: Complemental strand, 6532742 - 6532566
Alignment:
| Q |
42 |
aatccatactgatataaccattaaccagccttttgggatcaacaaaattaacactaagcaactatatgattgatacatctcagtgttaaggtttagtgga |
141 |
Q |
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|||| ||||||||||||||||||||||| |||| ||||||||||||| |||||||| || || |||||||||||| ||||| |||||||||||| |
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| T |
6532742 |
aatcaatactgatataaccattaaccagtctttagggatcaacaaaaccaacactaaataaataagtgattgatacattcaagtgtcaaggtttagtggt |
6532643 |
T |
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| Q |
142 |
aaatagccattcttacaaattccaatctatttcttttctaagcttatcttacttttattctcttgtggttttattttcttg |
222 |
Q |
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| T |
6532642 |
tagtagttattcttctgaattctaatcta-ttcttttctaagcttgccttac---tattctcttgtggttttattttcttg |
6532566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 6728050 - 6728139
Alignment:
| Q |
123 |
agtgttaaggtttagtggaaaatagccattcttacaaattccaatctatttcttttct----aagcttatcttacttttattctcttgtg |
208 |
Q |
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| T |
6728050 |
agtgtcaaggtttagtggaaaatagccattcttccaagtcccaatctatttattttctttccaagcttctcttactattattctcttgtg |
6728139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 191
Target Start/End: Original strand, 6796402 - 6796485
Alignment:
| Q |
108 |
tgattgatacatctcagtgttaaggtttagtggaaaatagccattcttacaaattccaatctatttcttttctaagcttatctt |
191 |
Q |
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| T |
6796402 |
tgattcatgcatcccagtgtcaaggtttagtgcaaaatagccattcttccaaattcgaatcaattttttctctaagcttctctt |
6796485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 6815105 - 6815170
Alignment:
| Q |
108 |
tgattgatacatctcagtgttaaggtttagtggaaaatagccattcttacaaattccaatctattt |
173 |
Q |
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| T |
6815105 |
tgattgatgcattgcagtgttaagatttagtgcaaaatagccattcttccaaattcgaatcaattt |
6815170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 6588570 - 6588530
Alignment:
| Q |
182 |
agcttatcttacttttattctcttgtggttttattttcttg |
222 |
Q |
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| T |
6588570 |
agcttctcttactattattctcttgtgcttttattttcttg |
6588530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0552 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0552
Description:
Target: scaffold0552; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 173
Target Start/End: Complemental strand, 8731 - 8666
Alignment:
| Q |
108 |
tgattgatacatctcagtgttaaggtttagtggaaaatagccattcttacaaattccaatctattt |
173 |
Q |
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| T |
8731 |
tgattgatgcattgcagtgttaagatttagtgcgaaatagccattcttccaaattcgaatcaattt |
8666 |
T |
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