View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16424_low_18 (Length: 204)
Name: NF16424_low_18
Description: NF16424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16424_low_18 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 5e-98; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 44892299 - 44892483
Alignment:
| Q |
20 |
taaaggacatattgaataatatcaaggccaaggaagaggaggaaaggatcactaatatggaggagggaacaattggtaaatcatcaagaccatcacaaca |
119 |
Q |
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| T |
44892299 |
taaaggacatattgaataatatcaaggccaaggaagaggaggaaaggatcactaatatggaggagggaacaattggtaaatcatcaagaccatcagaaca |
44892398 |
T |
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| Q |
120 |
caagaaaactgatttgagtaactttaaaactagaaaggcttatttttactggatggctggtgaacaaggtttctttgattggttt |
204 |
Q |
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| T |
44892399 |
caagaaaactgatttgagtaactttaaaactagaaaggcttatttttactggatggctggtgaacaaggtttctttgattggttt |
44892483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 44900954 - 44901136
Alignment:
| Q |
19 |
ataaaggacatattgaataatatcaaggccaaggaagaggaggaaaggatcactaatatggaggagggaacaattggtaaatcatcaagaccatcacaac |
118 |
Q |
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| T |
44900954 |
ataaaggacattttgaataattccaaggccatagaacaggaggaagggagcacca---tagaagagggaacaggtggcaaatcaccaagatcatcacaac |
44901050 |
T |
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| Q |
119 |
acaagaaaactgatttgagtaactttaaaactagaaaggcttatttttactggatggctggtgaacaaggtttctttgattggttt |
204 |
Q |
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| T |
44901051 |
gcaagaaaaccggtttaaataacttcaaaactagaaaggcttatttttattgggtggcggcgaaacaaggtttctttgattggttt |
44901136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 44917705 - 44917886
Alignment:
| Q |
20 |
taaaggacatattgaataatatcaaggccaaggaagaggaggaaaggatcactaatatggaggagggaacaattggtaaatcatcaagaccatcacaaca |
119 |
Q |
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| T |
44917705 |
taaaggacattgtgaataatttcaaggctatggaagaagatgaagggaccacta---tagaggagggaacaagtagtaaatcaccgagaccatcacaaca |
44917801 |
T |
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| Q |
120 |
caagaaaactgatttgagtaactttaaaactagaaaggcttatttttactggatggctggtgaacaaggtttctttgattggttt |
204 |
Q |
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| T |
44917802 |
caagagaaccggtttgaatagctttaaaactaagagggcttatttttactgggttactagagaacagggttcatttgattggttt |
44917886 |
T |
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