View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16424_low_2 (Length: 594)
Name: NF16424_low_2
Description: NF16424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16424_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 17 - 584
Target Start/End: Complemental strand, 42184413 - 42183841
Alignment:
| Q |
17 |
attaacaacataaaacaaaacatttatctctgaagagtgaatttcatagaggnnnnnnnn-----tcaagctttattatgttgattttgtttttgtttta |
111 |
Q |
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| T |
42184413 |
attaacaacataaaacaaagcatttatctctgaagagtgaatttaatagaggaagaaaaaaaaaatcaagctttattatgttgattttgtttttgtttta |
42184314 |
T |
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| Q |
112 |
gagtttagagtctttagaccaaatcacaacaaaacatgaaagtgaataagggaaaatcagataaactaaatcaaaagtacaaaacaaaacataggcatag |
211 |
Q |
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| T |
42184313 |
gagtttagagtctttagaccaaatcacaacaaaacatgaaagtgaataagggaaaatcagataaactaaatcaaaagtacaaaacaaaacataggcatag |
42184214 |
T |
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| Q |
212 |
tacatgtttggattcatgataaatttagaagaaccacagattttagcaaaagctatactttgaagcttaagccttcaacaaaatcacattggcaacctga |
311 |
Q |
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| T |
42184213 |
tacatgtttggattcatgataaatttagaagaatcacagattttagcaaaagctatacttagaagcttaagccttcaacaaaatcacattggcaacctga |
42184114 |
T |
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| Q |
312 |
tttcatgaaactcatatgatatgaatcaaaacatgtgattctaaacagatatagcaaaagacagatataaactcaccttggttgcttatttgaaccctca |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42184113 |
tttcatgaaactcatatgatatgaatcaaaacatgtgattctaaacagatatagcaaaatacagatataaactcaccttggttgcttatttgaaccctca |
42184014 |
T |
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| Q |
412 |
aagctgctattatgcaaagcaagggaagattggagataaggatgaaggggagtagaagcaagaaaatgtgatgaagatccatattttcttgtagttggat |
511 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42184013 |
aagctgctattatgcaaagaaagggaagattggagataaggatgaaggggagtagaagcaagaaaatgtgatgaagatccatattttcttgtagttggat |
42183914 |
T |
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| Q |
512 |
taggagcagccatagtaaaatcaggcacagaaaaagggttagaatcacaacgagcctttttgatttgatgatg |
584 |
Q |
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||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42183913 |
taggaacagccacagtaaaatcaggcacagaaaaagggttagaatcacaacgagcctttttgatttgatgatg |
42183841 |
T |
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