View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16424_low_3 (Length: 578)
Name: NF16424_low_3
Description: NF16424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16424_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 11 - 560
Target Start/End: Original strand, 15798598 - 15799147
Alignment:
| Q |
11 |
cataggaaaaacataagagggttgtttcgaaaacaattctagaaaagaatgtggatcactaagaagtgagttgaatttggaggagggtgggggagttgac |
110 |
Q |
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| T |
15798598 |
cataggaaaaacataagagggttgtttcgaaaacaattctagaaaagaacgtggatcactaagaagtgagttgaatttggaggagggtgggggagttgac |
15798697 |
T |
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| Q |
111 |
ttaagaaagtagcggccacaatcagaagccaaggcggcgtcaatacataatgtggcaactgtcactaattcgaatccagcacttcactttaagtaaggtt |
210 |
Q |
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| T |
15798698 |
ttaagaatgtagcggccacaatcagaagccaaggcggcgtcaatacataatgtggcaactgtcactaattcgaatccagcacttcactttaagtaaggtt |
15798797 |
T |
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| Q |
211 |
ctggtttccaatctcagagggaaaagtaaagaccaagtatgaaaccgttacaaagagatgagaaaaggctgttattaaatacacgggcgtgctgaaaagc |
310 |
Q |
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| T |
15798798 |
ctggttcccaatctcagagggaaaagtaaagaccaagtatgaaaccgttacaaagagatgagaaaaggctgttattaaatacacgggcgtgccgaaaagc |
15798897 |
T |
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| Q |
311 |
ataccaaaagttagcatcttctgtcttgggttatatttctgccactcttaatctagtccaaggttagaccttccatttggacaaacttcatattgtcagt |
410 |
Q |
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| T |
15798898 |
ataccaaaagttagcatcttctgtcttgggttatatttctgccactcttaatcaagtccaaggttagaccttccatttggacaaacttcatattgtcagt |
15798997 |
T |
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| Q |
411 |
acagtcattcatcatccatgttttgttttatttgcttcataaaccttgaagacttatattgtaatttaaggtaattaaggaattcacttatctgtatgct |
510 |
Q |
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| T |
15798998 |
gcagtcactcatcatccatgttttgttttatttgcttcataaaccttgaagacttatattgtaatttaaggtaattaaagaattcacttatctgtatgct |
15799097 |
T |
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| Q |
511 |
catatatcatcttaaagttttcagtgtgaagagtatggatgtaaaggatg |
560 |
Q |
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| T |
15799098 |
catatatcatcttaaagttttcagtgtgaagagtatggatgtaaaggatg |
15799147 |
T |
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