View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16424_low_4 (Length: 456)
Name: NF16424_low_4
Description: NF16424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16424_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 17 - 441
Target Start/End: Original strand, 20063911 - 20064339
Alignment:
| Q |
17 |
tggttgaaaaaattgtggacacttcgtaccaatcttatcattatttaaaaatattacacaacattttagaagataaaatgtgaaaagattacaaataaga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20063911 |
tggttgaaaaaattgtggacacttcgtaccaataatatcattatttaaaaatattacacaacattttagaagataaaatgtgaaaagattacaaataaga |
20064010 |
T |
|
| Q |
117 |
tatatcctaacttactnnnnnnnn-tagcatacttatacttggaagaaatataacaagaaaaagggcattagaaaaaagaaacaa-gcannnnnnnn--a |
212 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
20064011 |
tatatcctaacttactaaaaaaaaatagcatacttatacttggaagaaatataacaagaaaaagggcattagaaaaaagaaacaaagcatttttttttta |
20064110 |
T |
|
| Q |
213 |
tagctaggagctatcttcatcaactttcatgaccttaaggaattccatctcctccttaaacttagccattgaagcttttggaagtgacacaaagatccta |
312 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20064111 |
tagctaggaactatcttcatcaactttcatgaccttaaggaattccatctcctccttaaacttagccattgaagcttttggaagtgacacaaagatccta |
20064210 |
T |
|
| Q |
313 |
actcctcctttcattgaagaatccaacttacttggaggcnnnnnnngacacaaatccacaaaaccaaacatgttccaaggaacaggcacaatattcactg |
412 |
Q |
| |
|
||||||||||||||||||| |||||| ||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20064211 |
actcctcctttcattgaaggatccaaattatttggaggcaaaaaaaggcacaaatccacaaaaccaaacatgttccaaggaacaggcacaatattcactg |
20064310 |
T |
|
| Q |
413 |
aatctttccatccaaaatcaacttcttgc |
441 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
20064311 |
aatctttccatccaaaatcaacttcttgc |
20064339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University