View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16424_low_5 (Length: 435)
Name: NF16424_low_5
Description: NF16424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16424_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 426
Target Start/End: Complemental strand, 48597234 - 48596830
Alignment:
| Q |
16 |
acatacatggtaaaagataaataaataactttgattacattggtaagtggtaacactaccaaccttttgttgcaattgccatctaaaaaatatatagtat |
115 |
Q |
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| T |
48597234 |
acatacaagataaaagataaataaataattttgattacattggtaa-------cactaccaaccttttgttgcaattgccatctaaataatatatagtat |
48597142 |
T |
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| Q |
116 |
ttagttccatagaaaaattgttaaaaaatcaacaataatatttgtgcatatgatattctcatttatttatttaacaccttattttatctatatcaatctt |
215 |
Q |
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| T |
48597141 |
ttagttccatagaaaaattgttaaaaaatcaacaataatatttatgcatatgatattcttatttatttatttaacaccttattttatctatatctatctt |
48597042 |
T |
|
| Q |
216 |
catacctcatcaccaatttatcaaatccgtatcatactactcttctagatctctttttctcatggtgtatgcccaaaaagtgtttgcctaactttttata |
315 |
Q |
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| T |
48597041 |
catacctcatcaccaatttatcaaattcgtatcataccactcttctagatctctttttctcatggtgtatgcccaaaaggtgtttgcctaactttttata |
48596942 |
T |
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| Q |
316 |
ttaagtaacagaattaaaccatagtacaa-tgaatcgtattattactatatattgttataattatatcgaaagattggccaaagcgtaagaacatctgta |
414 |
Q |
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| T |
48596941 |
ttaagtaacagaattaaaccatagtacaactgaatcgtattattactatatattgttataattatatcgaaagaatggccaaagcgtaagaacatctgta |
48596842 |
T |
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| Q |
415 |
acgtagaattat |
426 |
Q |
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| T |
48596841 |
acatagaattat |
48596830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 365 - 426
Target Start/End: Complemental strand, 48591479 - 48591418
Alignment:
| Q |
365 |
tattgttataattatatcgaaagattggccaaagcgtaagaacatctgtaacgtagaattat |
426 |
Q |
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| T |
48591479 |
tattgttataattatatcgaaagattggccaatgcgtaagaacatctgtaacatagaattat |
48591418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 365 - 426
Target Start/End: Complemental strand, 48601174 - 48601113
Alignment:
| Q |
365 |
tattgttataattatatcgaaagattggccaaagcgtaagaacatctgtaacgtagaattat |
426 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
48601174 |
tattgttataattatatcgaaagattggccaatgcgtaagaacatctgtaacatagaattat |
48601113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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