View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16424_low_8 (Length: 384)
Name: NF16424_low_8
Description: NF16424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16424_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 14880198 - 14879830
Alignment:
| Q |
19 |
gtatcgttcttttgccatattttctccaacttg--cggtaattagaatcgacaatctaggaattctaaccacaccctaacaaaagaaaacgacaagtttt |
116 |
Q |
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| T |
14880198 |
gtatcattcttttgccatattttctccaacttgtgcggtaattagaatcgacaatctaggaattctaaccacaccctaacaaaagaaaacgacaagtttt |
14880099 |
T |
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| Q |
117 |
aaacataaacaacatattatgaacactaacaatggtattaggatgaaaatttgacataggaatataacaattattagaaacacaagaacatgcatatgaa |
216 |
Q |
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| T |
14880098 |
aaacataaacaacatattatgaacactaacaatggtattaggatgaaaatttgacataggaatataacaattattagaaacacaagaacatgcatatgaa |
14879999 |
T |
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| Q |
217 |
acacaagaacatagcaaccatttaaaaatg------nnnnnnnnnagaaatagaaatataagtagaaaagacaatccaagtcggtaaagcaaaacatcaa |
310 |
Q |
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| T |
14879998 |
acacaagaacatagcaaccatttaaaaatgattttttttatttttagaaatagaaatataagtagaaaagacaatccaagtcggtaaagcaaaacatcaa |
14879899 |
T |
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| Q |
311 |
gtcgggttttgaaacgaaagataaccatcttaggtatctttgatttctctcccattatcctttgcttct |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| |
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| T |
14879898 |
gtcgggttttgaaacgaaagataaccatcttaggtatctttgatttctcttccattctcctttgtttct |
14879830 |
T |
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