View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16425_high_13 (Length: 238)
Name: NF16425_high_13
Description: NF16425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16425_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 25038626 - 25038422
Alignment:
| Q |
18 |
gaaccataaacctattttgttacatgcatgttcaaatttattagtaataaaaatcttgtatttgttatgattttccgaaaaactttaactaactcgaatt |
117 |
Q |
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| T |
25038626 |
gaaccataaacctattttgttacatgcatgttgaaatttattagtaataaaaatcttgtatttgttatgattttccgaaaaactttaactaactcgaatt |
25038527 |
T |
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| Q |
118 |
aatggcatcaggcttctcaaaatggttcaataggcatcaccttaaattgtcactggtttttgccgttctcaaatgacactttagatcatcaagctgccga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
25038526 |
aatggcatcaggcttctcaaaatggttcaataggcatcaccttaaattgtcactggtttttgccgttctcaaatgacacgttagatcatcaagcttccga |
25038427 |
T |
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| Q |
218 |
acgtg |
222 |
Q |
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||||| |
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| T |
25038426 |
acgtg |
25038422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 45 - 222
Target Start/End: Complemental strand, 25017494 - 25017321
Alignment:
| Q |
45 |
atgttcaaatttattagtaataaaaatcttgtatttgttatgattttccgaaaaactttaactaactcgaattaatggcatcaggcttctcaaaatggtt |
144 |
Q |
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||||| ||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||| || |||||||||||| ||| ||||||||||||||| |
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| T |
25017494 |
atgttaaaatttatttgtaataaaaatcttgtatttgttatgattgtcc---aaacattaacta-cttgaattaatggcagcagtcttctcaaaatggtt |
25017399 |
T |
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| Q |
145 |
caataggcatcaccttaaattgtcactggtttttgccgttctcaaatgacactttagatcatcaagctgccgaacgtg |
222 |
Q |
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|||||||||||| ||||| | |||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
25017398 |
caataggcatcagcttaagctctcactggtttctgccgttctcaaatcacacattagatcatcaagctgccgaacgtg |
25017321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 222
Target Start/End: Original strand, 18804346 - 18804452
Alignment:
| Q |
116 |
ttaatggcatcaggcttctcaaaatggttcaataggcatcaccttaaattgtcactggtttttgccgttctcaaatgacactttagatcatcaagctgcc |
215 |
Q |
| |
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||||||| | |||||||||||||| ||| |||||||||||| ||||| ||| ||||||||||||| ||| || || | |||||||||||||||||| |
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| T |
18804346 |
ttaatggaagcaggcttctcaaaagggtataataggcatcacattaaactgtacctggtttttgccgcaatcagataacccgttagatcatcaagctgcc |
18804445 |
T |
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| Q |
216 |
gaacgtg |
222 |
Q |
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||||||| |
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| T |
18804446 |
gaacgtg |
18804452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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