View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16425_high_5 (Length: 540)
Name: NF16425_high_5
Description: NF16425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16425_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 19 - 535
Target Start/End: Original strand, 43143780 - 43144295
Alignment:
| Q |
19 |
gttatggtgtagtctcgggacttaaagatggtggatattctgatgatatgactcttgcagccatagctggtacatctttggttctcttatcaaatttctt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43143780 |
gttatggtgtagtctcgggacttaaagatggtggatattttgatgatatgactcttgcagccatagctggtacatctttggttctcttatcaaatttctt |
43143879 |
T |
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| Q |
119 |
tgatgcaattagcacattgatcatataaatatgatgaagatgaacattacgaaggagtcaaacaaacgaaacacgtgaaggnnnnnnnnnnnnnnnnnng |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
43143880 |
tgatgcaattagcacattgatcatataaatatgatgaagatgaacattacgaaggagtcaaacaaacgaaacacgtgaaggttttttttttttttttt-g |
43143978 |
T |
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| Q |
219 |
cgcgcctacttgtgaattccgccaaatgcgtttgacttcttcctagctaacatttagcactcctaaatatttaaacacagtgatcatcatatttaacttc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43143979 |
cgcgcctacttgtgaattccgccaaatgcgtttgacttcttcctagctaacatttagcactcctaaatatttaaacacagtgatcatcatatttaacttc |
43144078 |
T |
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| Q |
319 |
tctatctgcaccattgaaaaaccgattacttgataattgatccataaaaaatctgattcttcatagggattacgcaattgtaattagtaagagcactttc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43144079 |
tctatctgcaccattgaaaaaccgattacttgataattgatccataaaaaatctgattcttcatagggattacgcaattgtaattagtaagagcactttc |
43144178 |
T |
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| Q |
419 |
ttctagtttcttaatgcttattcatgtgcaattactataatgctgtcttttgcaggggctcataaaagacttattacttctcccccacttgctctctttc |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43144179 |
ttctagtttcttaatgcttattcatgtgcaattactataatgctgtcttttgcaggggctcataaaagacttattacttctcccccacttgctctctttc |
43144278 |
T |
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| Q |
519 |
ctcacccctttgctact |
535 |
Q |
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|||||||| |||||||| |
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| T |
43144279 |
ctcacccccttgctact |
43144295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 43155886 - 43155982
Alignment:
| Q |
19 |
gttatggtgtagtctcgggacttaaagatggtggatattctgatgatatgactcttgcagccatagctggtacatctttggttctcttatcaaattt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
43155886 |
gttatggtgtagtctcgggacttaaagatggtggatattctgatgatatgactcttgcagccatagctggtacatcttcggttgtcttatcaaattt |
43155982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 447 - 535
Target Start/End: Original strand, 43156567 - 43156655
Alignment:
| Q |
447 |
caattactataatgctgtcttttgcaggggctcataaaagacttattacttctcccccacttgctctctttcctcacccctttgctact |
535 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |
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| T |
43156567 |
caattactataatgctgtcttttgcaggggctcataaaagacttattacttctcccccagttgctgtctttcctcacccccttgctact |
43156655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 33833711 - 33833645
Alignment:
| Q |
23 |
tggtgtagtctcgggacttaaagatggtggatattctgatgatatgactcttgcagccatagctggt |
89 |
Q |
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|||||||||||| | |||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33833711 |
tggtgtagtctcagaacttcaaaatggtggatattctgatgatatgactcttgcagccatagctggt |
33833645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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