View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16425_high_6 (Length: 432)

Name: NF16425_high_6
Description: NF16425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16425_high_6
NF16425_high_6
[»] chr6 (3 HSPs)
chr6 (127-290)||(1145292-1145455)
chr6 (18-131)||(1145132-1145245)
chr6 (286-417)||(1145496-1145629)
[»] chr1 (8 HSPs)
chr1 (127-262)||(18279422-18279557)
chr1 (25-131)||(8300513-8300621)
chr1 (17-124)||(18279614-18279721)
chr1 (17-130)||(8296935-8297042)
chr1 (127-191)||(8297090-8297154)
chr1 (127-263)||(8300668-8300804)
chr1 (344-381)||(27801560-27801597)
chr1 (344-381)||(30725023-30725060)


Alignment Details
Target: chr6 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 127 - 290
Target Start/End: Original strand, 1145292 - 1145455
Alignment:
Q  127 ctttctaagttcccttttaattccattctatcctccagatacttgatagactcgagaaaattcagtgtaaagcttttcatacttctaacaaacgtcaaaa 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1145292 ctttctaagttcccttttaattccattctatcctccagatacttgatagactcgagaaaattcagtgtaaagcttttcatacttctaacaaacgtcaaaa 1145391  T
Q  227 tattatcaaacttagccacattgattatcatccatttgataaaaaaccaaaactgattgtgtca 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1145392 tattatcaaacttagccacattgattatcatccatttgataaaaaaccaaaactgattgtgtca 1145455  T

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Target: chr6; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 1145132 - 1145245
Alignment:
Q  18 acatcaagagcaaaattttcagaatattaaacagagtttttcatgcttcaaactttgaaaatgaaattaacaaggcaagaaattttactcgagataaatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  1145132 acatcaagagcaaaattttcagaatattaaacagagtttttcatgcttcaaactttgaaaatgaaattaaccaggcaagatattttactcgagataaatc 1145231  T
Q  118 cgcataaagctttc 131  Q
    ||||||||||||||    
T  1145232 cgcataaagctttc 1145245  T

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Target: chr6; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 286 - 417
Target Start/End: Original strand, 1145496 - 1145629
Alignment:
Q  286 tgtcattctctcatgttagctatgcacaacgttccagacttctggtgtannnnnnnn--ggtcttttatgatgcaatgaaagggcacaattgggaaatca 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||    
T  1145496 tgtcattctctcatgttagctatgcacaacgttccagacttctggtgtattttttttttggtcttttatgatgcaatgaaagggcacaattgggaaatca 1145595  T
Q  384 taaaaagatggaactttggcctgtttgtttcttc 417  Q
    ||||||||||||||||||||||||||||||||||    
T  1145596 taaaaagatggaactttggcctgtttgtttcttc 1145629  T

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Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 127 - 262
Target Start/End: Complemental strand, 18279557 - 18279422
Alignment:
Q  127 ctttctaagttcccttttaattccattctatcctccagatacttgatagactcgagaaaattcagtgtaaagcttttcatacttctaacaaacgtcaaaa 226  Q
    ||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||| ||||||||||| |||  || || | |||||||||    
T  18279557 ctttctaagttcccttttaattccattctatcctccaaagacttaatagactcgagaaaattcagcgtaaagcttttgatatatccaatatacgtcaaaa 18279458  T
Q  227 tattatcaaacttagccacattgattatcatccatt 262  Q
    ||||||||||||| ||||||||||||||||||||||    
T  18279457 tattatcaaactttgccacattgattatcatccatt 18279422  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 8300513 - 8300621
Alignment:
Q  25 gagcaaaattttcagaatattaaa--cagagtttttcatgcttcaaactttgaaaatgaaattaacaaggcaagaaattttactcgagataaatccgcat 122  Q
    ||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |    
T  8300513 gagcaaaattttcagaatattaaagacagagtttttcattcttcaaactttgaaaatgaaattaacaaggcaagaaattttactcgagatagatctgcgt 8300612  T
Q  123 aaagctttc 131  Q
    |||| ||||    
T  8300613 aaagatttc 8300621  T

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Target: chr1; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 18279721 - 18279614
Alignment:
Q  17 aacatcaagagcaaaattttcagaatattaaacagagtttttcatgcttcaaactttgaaaatgaaattaacaaggcaagaaattttactcgagataaat 116  Q
    ||||||| |||||| | ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  18279721 aacatcatgagcaatactttcagaatattaaagacagtttttcatgcttcaaactttgaaaatgaaattaacaagccaagaaattttactcgagataagt 18279622  T
Q  117 ccgcataa 124  Q
     |||||||    
T  18279621 acgcataa 18279614  T

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Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 8296935 - 8297042
Alignment:
Q  17 aacatcaagagcaaaattttcagaatattaaa--cagagtttttcatgcttcaaactttgaaaatgaaattaacaaggcaagaaattttactcgagataa 114  Q
    ||||||| ||||| |||||||||||| |||||  |||||||||||||||||||||||        ||||||||||||||||||||||||||| |||||||    
T  8296935 aacatcatgagcagaattttcagaatgttaaatacagagtttttcatgcttcaaact--------gaaattaacaaggcaagaaattttactagagataa 8297026  T
Q  115 atccgcataaagcttt 130  Q
    ||||||||||||||||    
T  8297027 atccgcataaagcttt 8297042  T

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Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 8297090 - 8297154
Alignment:
Q  127 ctttctaagttcccttttaattccattctatcctccagatacttgatagactcgagaaaattcag 191  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  8297090 ctttctaagttcccttttaattccattctatcctccatagacttgatagactcgagaaaattcag 8297154  T

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Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 127 - 263
Target Start/End: Original strand, 8300668 - 8300804
Alignment:
Q  127 ctttctaagttcccttttaattccattctatcctccagatacttgatagactcgagaaaattcagtgtaaagcttttcatacttctaacaaacgtcaaaa 226  Q
    |||||| |||||||||||||||||| ||||||||||| | ||||||||||||| ||||||||||| |||||| |||| |||  ||||||||||  ||||     
T  8300668 ctttctgagttcccttttaattccactctatcctccatagacttgatagactcaagaaaattcagcgtaaagtttttgatatatctaacaaacagcaaag 8300767  T
Q  227 tattatcaaacttagccacattgattatcatccattt 263  Q
     |||||| |||  | |||| || ||||||||||||||    
T  8300768 aattatccaacacaaccaccttaattatcatccattt 8300804  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 381
Target Start/End: Complemental strand, 27801597 - 27801560
Alignment:
Q  344 gtcttttatgatgcaatgaaagggcacaattgggaaat 381  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  27801597 gtcttttatgatgcaatgaaagggtacaattggaaaat 27801560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 381
Target Start/End: Original strand, 30725023 - 30725060
Alignment:
Q  344 gtcttttatgatgcaatgaaagggcacaattgggaaat 381  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  30725023 gtcttttatgatgcaatgaaagggtacaattggaaaat 30725060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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