View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16425_high_7 (Length: 428)

Name: NF16425_high_7
Description: NF16425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16425_high_7
NF16425_high_7
[»] chr3 (2 HSPs)
chr3 (1-409)||(45382883-45383291)
chr3 (82-171)||(50084778-50084869)
[»] chr1 (2 HSPs)
chr1 (88-186)||(31686728-31686828)
chr1 (83-236)||(25101927-25102080)
[»] chr5 (3 HSPs)
chr5 (89-143)||(27803033-27803089)
chr5 (82-186)||(41978263-41978369)
chr5 (118-186)||(16265448-16265516)
[»] chr8 (3 HSPs)
chr8 (92-145)||(40688136-40688191)
chr8 (82-145)||(31344424-31344487)
chr8 (92-170)||(7620090-7620172)
[»] chr2 (1 HSPs)
chr2 (82-169)||(9151330-9151417)


Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 45382883 - 45383291
Alignment:
Q  1 accaattagtcacttcctttgctttctccacttctatgaaacttaattgtcatacagaattacggcttannnnnnnnnnnnctaaatttt-gtgttactt 99  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||            ||||||||| |||||||||    
T  45382883 accaattagtcaattcctttgctttctccacttctatgaaactta-ttgtcatacagaattacggcttattttttatttttctaaatttttgtgttactt 45382981  T
Q  100 ttacttgttaacaatgagaaaagactcttgaagtgaacaattgtgttgtactttcggaaacaatgaaaatgttaaatgagctattttttgtcatttcttg 199  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  45382982 ttacttgttaacaatgagaaaagactcttgaagtgaataattgtgttgtactttcggaaacaatgaaaatgttaaatgagctattttttgttatttcttg 45383081  T
Q  200 aaatgtgtcatccctagttagcatttaatcttctctcaatcaaaatggctcatttgataaatgaaaatagaaaatgtgtttacgaagtaaatagaccctt 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  45383082 aaatgtgtcatccctagttagcatttaatcttctctcaatcaaaatggctcatttgataaatgaaaatagaaaacgtgtttacgaagtaaatagaccctt 45383181  T
Q  300 aaataacacatttgataaatatgttacaatagaagataagaaaagtaatttattttaatttcatgaaaagtaaaactgatttgaggtggactgagatgga 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  45383182 aaataacacatttgataaatatgttacaatagaagataagaaaagtaatttattttaatttcatgaaaagtaaaactgatttgaggtggactgagatcga 45383281  T
Q  400 tggtcggttg 409  Q
    ||||||||||    
T  45383282 tggtcggttg 45383291  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 171
Target Start/End: Original strand, 50084778 - 50084869
Alignment:
Q  82 ctaaattttgtgttacttttacttgttaacaatgagaaa--agactcttgaagtgaacaattgtgttgtactttcggaaacaatgaaaatgt 171  Q
    ||||| ||||| ||| |||||||||||||||| ||||||  |||||||||| |||||||||||  ||| | || | ||||||||||||||||    
T  50084778 ctaaaatttgtattaattttacttgttaacaaggagaaaggagactcttgatgtgaacaattgccttgaatttccagaaacaatgaaaatgt 50084869  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 186
Target Start/End: Original strand, 31686728 - 31686828
Alignment:
Q  88 tttgtgttacttttacttgttaacaatgagaaa--agactcttgaagtgaacaattgtgttgtactttcggaaacaatgaaaatgttaaatgagctattt 185  Q
    ||||||||| |||||||||||||||| ||||||  ||||||||||||||||| ||||| ||| | || |  ||||||||||||||| ||| || ||||||    
T  31686728 tttgtgttagttttacttgttaacaaggagaaaagagactcttgaagtgaacgattgtcttgcatttcctaaaacaatgaaaatgtcaaaagaactattt 31686827  T
Q  186 t 186  Q
    |    
T  31686828 t 31686828  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 236
Target Start/End: Original strand, 25101927 - 25102080
Alignment:
Q  83 taaattttgtgttacttttacttgttaacaatgagaaa-agactcttgaagtgaacaattgtgttgtactttcggaaacaatgaaaatgttaaatgagct 181  Q
    |||| ||||||| | |||||||| ||||||| |||||| ||||||||| || ||||| |||| ||||| ||  ||||| ||||||||||   ||||||||    
T  25101927 taaaatttgtgtaagttttacttcttaacaaggagaaagagactcttggagggaacatttgtcttgtatttctggaaataatgaaaatgcctaatgagct 25102026  T
Q  182 attttttgtcatttcttgaaatgtgtcatccctagttagcatttaatcttctctc 236  Q
    ||||||  |  |||| |||| ||  || ||||||| |||||||| ||||||||||    
T  25102027 atttttatttttttc-tgaagtgcatcgtccctagctagcattttatcttctctc 25102080  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 27803089 - 27803033
Alignment:
Q  89 ttgtgttacttttacttgttaacaatgagaaa--agactcttgaagtgaacaattgt 143  Q
    |||||||| |||||||||||||||| ||||||  |||||||||||||||||||||||    
T  27803089 ttgtgttagttttacttgttaacaaggagaaaagagactcttgaagtgaacaattgt 27803033  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 186
Target Start/End: Complemental strand, 41978369 - 41978263
Alignment:
Q  82 ctaaattttgtgttacttttacttgttaacaatgagaaaaga--ctcttgaagtgaacaattgtgttgtactttcggaaacaatgaaaatgttaaatgag 179  Q
    ||||| ||||||||  |||||||||||| |||  ||| ||||  ||||||||||||| |||||| ||| | || |||||||||||||||||| ||| ||     
T  41978369 ctaaaatttgtgttgtttttacttgttagcaagaagataagaggctcttgaagtgaagaattgttttgcatttccggaaacaatgaaaatgtcaaaagaa 41978270  T
Q  180 ctatttt 186  Q
    |||||||    
T  41978269 ctatttt 41978263  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 16265516 - 16265448
Alignment:
Q  118 aaaagactcttgaagtgaacaattgtgttgtactttcggaaacaatgaaaatgttaaatgagctatttt 186  Q
    ||||||||||||||||||||| |||| ||| | || | |||||||||||||||| |||  |||||||||    
T  16265516 aaaagactcttgaagtgaacatttgtcttgcatttccagaaacaatgaaaatgtcaaaatagctatttt 16265448  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 40688136 - 40688191
Alignment:
Q  92 tgttacttttacttgttaacaatgagaaa--agactcttgaagtgaacaattgtgt 145  Q
    ||||| ||||||||| ||||||||||| |  |||||||||||||||||||||||||    
T  40688136 tgttaattttacttggtaacaatgagatactagactcttgaagtgaacaattgtgt 40688191  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 31344487 - 31344424
Alignment:
Q  82 ctaaattttgtgttacttttacttgttaacaatgagaaaagactcttgaagtgaacaattgtgt 145  Q
    ||||| ||||||||| ||||||||  | |||| |||| ||||||||||||||||||| ||||||    
T  31344487 ctaaagtttgtgttaattttacttcctgacaaagagataagactcttgaagtgaacacttgtgt 31344424  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 170
Target Start/End: Complemental strand, 7620172 - 7620090
Alignment:
Q  92 tgttacttttacttgttaacaatgagaaa----agactcttgaagtgaacaattgtgttgtactttcggaaacaatgaaaatg 170  Q
    ||||| |||||||||||||||| ||||||    ||||||||||||| ||||||||| ||| | ||||  ||| ||||||||||    
T  7620172 tgttagttttacttgttaacaaggagaaaagagagactcttgaagttaacaattgtcttgcattttcaaaaataatgaaaatg 7620090  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 169
Target Start/End: Complemental strand, 9151417 - 9151330
Alignment:
Q  82 ctaaattttgtgttacttttacttgttaacaatgagaaaagactcttgaagtgaacaattgtgttgtactttcggaaacaatgaaaat 169  Q
    ||||| ||||||||| |  ||| || ||| || ||||||||||||||||||||||||||||| ||| | ||  |||||| ||||||||    
T  9151417 ctaaaatttgtgttattcctacatggtaataaagagaaaagactcttgaagtgaacaattgtcttgcatttctggaaacgatgaaaat 9151330  T

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