View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16425_low_1 (Length: 631)

Name: NF16425_low_1
Description: NF16425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16425_low_1
NF16425_low_1
[»] chr2 (16 HSPs)
chr2 (1-616)||(39492099-39492717)
chr2 (153-259)||(39132114-39132220)
chr2 (153-255)||(2363527-2363629)
chr2 (145-254)||(39605075-39605184)
chr2 (505-588)||(39132995-39133077)
chr2 (153-196)||(39470309-39470352)
chr2 (7-114)||(39470851-39470958)
chr2 (176-255)||(39372209-39372288)
chr2 (176-255)||(39379517-39379596)
chr2 (1-100)||(39125704-39125804)
chr2 (165-255)||(39188303-39188393)
chr2 (153-255)||(39386312-39386413)
chr2 (182-259)||(39126259-39126336)
chr2 (154-255)||(39179698-39179798)
chr2 (156-201)||(39503154-39503199)
chr2 (304-359)||(39132587-39132645)
[»] chr4 (1 HSPs)
chr4 (163-255)||(33153107-33153199)
[»] chr3 (1 HSPs)
chr3 (182-249)||(51576903-51576970)


Alignment Details
Target: chr2 (Bit Score: 536; Significance: 0; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 1 - 616
Target Start/End: Complemental strand, 39492717 - 39492099
Alignment:
Q  1 cagagaggcaaagagtgtttttactggaaacagcgagtgttatcctcctaataagaaacaacctaatgtaaagatatgtggtagagaaaacccgctaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39492717 cagagaggcaaagagtgtttttactggaaacagcgagtgttatcctcctaataagaaacaacctaatgtaaagatatgtggtagagaaaacccgctaaca 39492618  T
Q  101 cattcccttgtaaacgagttaacagatttatcgcagattcgcagaactagtcagttttgataaagtgaaattttgttgcagcttgtagattttgttcaga 200  Q
    |||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39492617 cattcccttgtaaacgagttaacagatttatcgcaga--------actagtcagttttgataaagtgaaattttgttgcagcttgtagattttgttcaga 39492526  T
Q  201 atctcatcagaaagtagcaatatattgaagctgttagattcatttgtgcatataataacacggctgaaaggcaaatagtatttgtataggaagcacatca 300  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  39492525 atgtcatcagaaagtagcaatatattgaagctgttagattcatttgtgcatataataacacggctgaaaggtaaatagtattggtataggaagcacatca 39492426  T
Q  301 tgtattaacagggttctctctattcctctttgttgagatagtgtagtatttgtttagatattattccccattagttgattcttttccctaatttagagat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39492425 tgtattaacagggttctctctattcctctttgttgagatagtgtagtatttgtttagatattattcccctttagttgattcttttccctaatttagagat 39492326  T
Q  401 tgagcaggttaagcatcatgtatataaa-----------tctatgtcgttaatcagaaaatacagtattattagataatgtgtttttaaggtatcaccct 489  Q
    ||||||||||||||||||||||||||||           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39492325 tgagcaggttaagcatcatgtatataaactgaattctcttctatgtcgttcatcagaaaatacagtattattagataatgtgtttttaaggtatcaccct 39492226  T
Q  490 tatcataaagcactctaggaagttgaacaaacatgcgaaccatctagccaaatgtgtaatatattttaaacataatcaaattttggagtaaaaaatcatt 589  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39492225 tatcataaagcactctaggaagttgaacaaacatgcgaaccatctagccaaatgtgtaatatattttaaacataatcaaattttggagtagaaaatcatt 39492126  T
Q  590 ttagtctcatagaaagagtcactgcat 616  Q
    |||||||||||||||||||||||||||    
T  39492125 ttagtctcatagaaagagtcactgcat 39492099  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 153 - 259
Target Start/End: Original strand, 39132114 - 39132220
Alignment:
Q  153 agttttgataaagtgaaattttgttgcagcttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatttgtgcata 252  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||| |||  |||| |||||| ||||||||||||| || |||| | |||||||||||    
T  39132114 agttttgataaagtgaaattatgttgcagtttgtagattttgttcaggatcatatcataaagtaacaatatattgaagatggtagactaatttgtgcata 39132213  T
Q  253 taataac 259  Q
    | |||||    
T  39132214 ttataac 39132220  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 153 - 255
Target Start/End: Original strand, 2363527 - 2363629
Alignment:
Q  153 agttttgataaagtgaaattttgttgcagcttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatttgtgcata 252  Q
    ||||||||| ||||||||||||  |||| |||| |||||||||||||||||| ||||  ||| ||||||||||||| |||||||||||||| || |||||    
T  2363527 agttttgatgaagtgaaattttcctgcaccttgcagattttgttcagaatcttatcatgaagcagcaatatattgaggctgttagattcatctgcgcata 2363626  T
Q  253 taa 255  Q
    |||    
T  2363627 taa 2363629  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 145 - 254
Target Start/End: Original strand, 39605075 - 39605184
Alignment:
Q  145 aactagtcagttttgataaagtgaaattttgttgcagcttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatt 244  Q
    ||||||| ||||||| | ||||||||||||| |||| |||| ||||||||||||||| || ||||  ||| | ||| |||||||||||| ||||||||||    
T  39605075 aactagttagttttgttgaagtgaaattttggtgcaccttgcagattttgttcagaaacttatcatgaagaaacaaaatattgaagctgctagattcatt 39605174  T
Q  245 tgtgcatata 254  Q
     |||| ||||    
T  39605175 cgtgcttata 39605184  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 505 - 588
Target Start/End: Original strand, 39132995 - 39133077
Alignment:
Q  505 taggaagttgaacaaacatgcgaaccatctagccaaatgtgtaatatattttaaacataatcaaattttggagtaaaaaatcat 588  Q
    |||| |||||||||||  ||||||||||||| |||||||| ||||||  |||||  |||||| |||||||||||||||||||||    
T  39132995 tagggagttgaacaaatgtgcgaaccatctaaccaaatgtataatat-ctttaagtataatcgaattttggagtaaaaaatcat 39133077  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 153 - 196
Target Start/End: Complemental strand, 39470352 - 39470309
Alignment:
Q  153 agttttgataaagtgaaattttgttgcagcttgtagattttgtt 196  Q
    |||| ||||||||||||||||||||||| |||||||||||||||    
T  39470352 agttatgataaagtgaaattttgttgcaccttgtagattttgtt 39470309  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 39470958 - 39470851
Alignment:
Q  7 ggcaaagagtgtttttactggaaacagcgagtgttatcctcctaataagaaacaacctaatgtaaagatatgtggtagagaaaacccgctaacacattcc 106  Q
    |||||| ||| ||||||||||||  || |||||| ||| ||| |||| | |||||||||||||| || || ||||||| ||||||| |||||||  || |    
T  39470958 ggcaaatagtatttttactggaagtagtgagtgtcatcttccaaatacgcaacaacctaatgtatagttacgtggtagcgaaaacctgctaacatgtttc 39470859  T
Q  107 cttgtaaa 114  Q
    ||||||||    
T  39470858 cttgtaaa 39470851  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 255
Target Start/End: Original strand, 39372209 - 39372288
Alignment:
Q  176 ttgcagcttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatttgtgcatataa 255  Q
    ||||| |||| |||||||||| ||||||| || || | | |||||| | ||| ||||||||||||||||| |||||||||    
T  39372209 ttgcaccttgcagattttgttgagaatcttattaggaggaagcaatttgttgtagctgttagattcatttctgcatataa 39372288  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 255
Target Start/End: Complemental strand, 39379596 - 39379517
Alignment:
Q  176 ttgcagcttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatttgtgcatataa 255  Q
    ||||| |||| |||||||||| ||||||| ||||  | | |||||| | ||| |||||||||||||| ||||||||||||    
T  39379596 ttgcaccttgcagattttgttgagaatcttatcaagaggaagcaatttgttgtagctgttagattcagttgtgcatataa 39379517  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 39125704 - 39125804
Alignment:
Q  1 cagagaggcaaagagtgtttttactggaaacagcgagtgttatcctcctaataagaaacaaccta--atgtaaagatatgtggtagagaaaacccgctaa 98  Q
    |||||||||||| |||||||||||| ||| | | |||||| ||| ||| |||| | |||||||||  ||||||||||||||| ||| | ||||| |||||    
T  39125704 cagagaggcaaatagtgtttttactagaaccggtgagtgtcatcatcc-aatatgcaacaacctaatatgtaaagatatgtgctagcggaaacctgctaa 39125802  T
Q  99 ca 100  Q
    ||    
T  39125803 ca 39125804  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 165 - 255
Target Start/End: Complemental strand, 39188393 - 39188303
Alignment:
Q  165 gtgaaattttgttgcagcttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatttgtgcatataa 255  Q
    |||| ||||| ||||| || | ||||||||| |||| ||| ||||  ||  ||||||||  ||||||||||||||||| ||||||||||||    
T  39188393 gtgagattttcttgcacctggcagattttgtacagagtcttatcaagaaacagcaatatgatgaagctgttagattcagttgtgcatataa 39188303  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 39386413 - 39386312
Alignment:
Q  153 agttttgataaagtgaaattttgttgcagcttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatttgtgcata 252  Q
    |||| |||| |||||||||||  ||||| |||  |||||||||| || |||| ||||  | | |||||| | |||||||||||||||||| |||||||||    
T  39386413 agttatgatgaagtgaaatttc-ttgcatcttccagattttgttaagcatcttatcaagaggaagcaatttgttgaagctgttagattcagttgtgcata 39386315  T
Q  253 taa 255  Q
    |||    
T  39386314 taa 39386312  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 259
Target Start/End: Original strand, 39126259 - 39126336
Alignment:
Q  182 cttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatttgtgcatataataac 259  Q
    |||| |||||||| | ||||||  ||| | |||| |||| |||| |||| |||| |||||||||||||||||||||||    
T  39126259 cttgcagattttgcttagaatcatatctggaagttgcaacatatggaagttgtttgattcatttgtgcatataataac 39126336  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 255
Target Start/End: Original strand, 39179698 - 39179798
Alignment:
Q  154 gttttgataaagtgaaattttgttgcagcttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatttgtgcatat 253  Q
    |||||||| |||||||||||  ||||| |||| |||||||||| || |||| ||||  | | |||||  | ||| |||||||||||||| ||||||||||    
T  39179698 gttttgatgaagtgaaatttc-ttgcatcttgcagattttgttaagcatcttatcaacaggaagcaaattgttgcagctgttagattcagttgtgcatat 39179796  T
Q  254 aa 255  Q
    ||    
T  39179797 aa 39179798  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 39503199 - 39503154
Alignment:
Q  156 tttgataaagtgaaattttgttgcagcttgtagattttgttcagaa 201  Q
    |||||| |||||||||||||||| | |||| |||||||||||||||    
T  39503199 tttgatgaagtgaaattttgttgtaccttgcagattttgttcagaa 39503154  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 359
Target Start/End: Original strand, 39132587 - 39132645
Alignment:
Q  304 attaacagggttctctctattcct---ctttgttgagatagtgtagtatttgtttagat 359  Q
    ||||||||| ||||||||||||||   ||||||||||||| | |||| |||||||||||    
T  39132587 attaacaggattctctctattcctcctctttgttgagatattttagtgtttgtttagat 39132645  T

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Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 163 - 255
Target Start/End: Original strand, 33153107 - 33153199
Alignment:
Q  163 aagtgaaattttgttgcagcttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatttgtgcatataa 255  Q
    |||||||| ||| ||||| |||| |||||||||||||||||| ||| | ||| ||||| |||||||||||||||||||||| ||||| |||||    
T  33153107 aagtgaaactttattgcaacttgcagattttgttcagaatcttatccggaagaagcaacatattgaagctgttagattcatatgtgcttataa 33153199  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 51576903 - 51576970
Alignment:
Q  182 cttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatttgtgc 249  Q
    |||| |||||||||||||||||| |||   ||  ||||| || |||||||||||||||||||||||||    
T  51576903 cttgcagattttgttcagaatcttatcgataatcagcaacatgttgaagctgttagattcatttgtgc 51576970  T

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