View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16425_low_10 (Length: 365)

Name: NF16425_low_10
Description: NF16425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16425_low_10
NF16425_low_10
[»] chr8 (4 HSPs)
chr8 (142-347)||(18167202-18167407)
chr8 (142-347)||(18630756-18630961)
chr8 (8-145)||(18166161-18166287)
chr8 (46-95)||(18166238-18166287)


Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 142 - 347
Target Start/End: Original strand, 18167202 - 18167407
Alignment:
Q  142 taagtttgtgaaaaataagaggttcaaaaggttatgctataaaataagtctagaaaagtgtaatatgtttattaccataaaaagatttgacattataatt 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18167202 taagtttgtgaaaaataagaggttcaaaaggttatgctataaaataagtctagaaaagtgtaatatgtttattaccataaaaagatttgacattataatt 18167301  T
Q  242 ggtgctgcttctggatttgcttgtaaggcattcatcaatgaagttctgctaagccttaaaatttgtgaaagctctttggtcctaacagtgaatggttgtt 341  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18167302 ggtgctgcttctggatttgcttgtatggcattcatcaatgaagttctgctaagccttaaaatttgtgaaagctctttggtcctaacagtgaatggttgtt 18167401  T
Q  342 gcttat 347  Q
    ||||||    
T  18167402 gcttat 18167407  T

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Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 142 - 347
Target Start/End: Original strand, 18630756 - 18630961
Alignment:
Q  142 taagtttgtgaaaaataagaggttcaaaaggttatgctataaaataagtctagaaaagtgtaatatgtttattaccataaaaagatttgacattataatt 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18630756 taagtttgtgaaaaataagaggttcaaaaggttatgctataaaataagtctagaaaagtgtaatatgtttattaccataaaaagatttgacattataatt 18630855  T
Q  242 ggtgctgcttctggatttgcttgtaaggcattcatcaatgaagttctgctaagccttaaaatttgtgaaagctctttggtcctaacagtgaatggttgtt 341  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18630856 ggtgctgcttctggatttgcttgtatggcattcatcaatgaagttctgctaagccttaaaatttgtgaaagctctttggtcctaacagtgaatggttgtt 18630955  T
Q  342 gcttat 347  Q
    ||||||    
T  18630956 gcttat 18630961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 18166161 - 18166287
Alignment:
Q  8 cgaagaatatacagttttgaacctcttattttcagagacttacgattttagttccttatttctaaatccaaaatatgatccttcagttaactgaaggatt 107  Q
    ||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||           ||||||||||||    
T  18166161 cgaagaaaatacaattttgaacctcttattttcagagacttacaattttagttccttatttctaaatccaaaatatg-----------aactgaaggatt 18166249  T
Q  108 atattttacatttagaaatcacgaactaaaatcgtaag 145  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  18166250 atattttagatttagaaattacgaactaaaatcgtaag 18166287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 18166287 - 18166238
Alignment:
Q  46 cttacgattttagttccttatttctaaatccaaaatatgatccttcagtt 95  Q
    |||||||||||||||| | ||||||||||| ||||||| |||||||||||    
T  18166287 cttacgattttagttcgtaatttctaaatctaaaatataatccttcagtt 18166238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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