View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16425_low_11 (Length: 359)

Name: NF16425_low_11
Description: NF16425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16425_low_11
NF16425_low_11
[»] chr5 (7 HSPs)
chr5 (73-344)||(24044659-24044930)
chr5 (79-344)||(24052836-24053109)
chr5 (79-341)||(24049693-24049963)
chr5 (59-150)||(24106419-24106509)
chr5 (61-136)||(24102191-24102266)
chr5 (7-41)||(24109474-24109508)
chr5 (293-325)||(24106907-24106939)
[»] chr6 (5 HSPs)
chr6 (58-136)||(4261164-4261242)
chr6 (61-120)||(4300967-4301026)
chr6 (184-233)||(4267934-4267983)
chr6 (61-136)||(4268040-4268115)
chr6 (155-217)||(4261046-4261106)


Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 73 - 344
Target Start/End: Original strand, 24044659 - 24044930
Alignment:
Q  73 actattcaaaccacagatactgcagaaatgttgattgattaggaatattatattttcccaacttaaattaatttaatcttttaattttaaagtaatgttg 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24044659 actattcaaaccacagatactgcagaaatgttgattgattaggaatattatattttcccaacttaaattaatttaatcttttaattttaaagtaatgttg 24044758  T
Q  173 attgatgtttcaaatggtcatcagaaagaaatttaaagtaattttagaaaatttgaaacagatgtattgatacaattccatcgatatggatcttgattaa 272  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24044759 attgatgtttgaaatggtcatcagaaagaaatttaaagtaattttagaaaatttgaaacagatgtattgatacaattccatcgatatggatcttgattaa 24044858  T
Q  273 ttagctttttgttataatggtagcagagagaattgaatttatcagtctcacttaaatactttagtcctagat 344  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24044859 ttagctttttgttataatggtagcagagagacttgaatttatcagtctcacttaaatactttagtcctagat 24044930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 79 - 344
Target Start/End: Original strand, 24052836 - 24053109
Alignment:
Q  79 caaaccacagatactgcagaaatgttgattgattaggaatattatattttcccaacttaaattaatttaatctttt-----------aattttaaagtaa 167  Q
    |||||||||||||| ||  ||||||| |||| |||||||||| |||||||||||||||||||||||||||||| ||           |||||||||||||    
T  24052836 caaaccacagataccgcctaaatgttcattggttaggaatataatattttcccaacttaaattaatttaatctgttttttccatggaaattttaaagtaa 24052935  T
Q  168 tgttgattgatgtttcaaatggtcatcagaaagaaatttaaagtaattttagaaaatttgaaacagatgtattgatacaattccatcgatatggatcttg 267  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  24052936 tgttgattgttgtttgaaatggtcatcagaaagaaatttaaagtaaagttagaaaatttgaaacagatgtattgatacaattccctcaatatggatcttg 24053035  T
Q  268 attaattagctttttgttataatggtagcagagagaattgaatttatcagtctcacttaaa-tactttagtcctagat 344  Q
        |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||    
T  24053036 ----attagctttttgttataatggtagcagagagacttgaatttatcggtctcacttaaagtactttagtcctagat 24053109  T

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Target: chr5; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 79 - 341
Target Start/End: Original strand, 24049693 - 24049963
Alignment:
Q  79 caaaccacagatactgcagaaatgttgattgattaggaatattatattttcccaacttaaattaatttaatctttt------------aattttaaagta 166  Q
    |||||||||||||| ||  ||||||| |||| |||||| ||| |||||||||||||||||||||||||||||||||            ||||||||||||    
T  24049693 caaaccacagataccgcctaaatgttcattggttaggagtataatattttcccaacttaaattaatttaatctttttttttccatggaaattttaaagta 24049792  T
Q  167 atgttgattgatgtttcaaatggtcatcagaaagaaatttaaagtaattttagaaaatttgaaacagatgtattgatacaattccatcgatatggatctt 266  Q
    |||||||||||||||| |||||||||||||||| |||||||||||| | ||||||||||||||||||||||||| |||||||||| || |||||||||||    
T  24049793 atgttgattgatgtttgaaatggtcatcagaaa-aaatttaaagtactgttagaaaatttgaaacagatgtattcatacaattccctcaatatggatctt 24049891  T
Q  267 gattaattagctttttgttataatggtagcagagagaattgaatttatcagtctcacttaaa-tactttagtccta 341  Q
    |    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||    
T  24049892 g----attagctttttgttataatggtagcagagagacttgaatttatcggtctcacttaaagtactttagtccta 24049963  T

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Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 24106419 - 24106509
Alignment:
Q  59 acagttctaaggccactattcaaaccacagatactgcagaaatgttgattgattaggaatattatattttcccaacttaaattaatttaatc 150  Q
    |||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||| ||||||||  |||| ||||||||||||||    
T  24106419 acagttctaaggccac-attcaaaccacagacacggcagaaatgttgattgattaggaatataatattttcttaactaaaattaatttaatc 24106509  T

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Target: chr5; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 61 - 136
Target Start/End: Original strand, 24102191 - 24102266
Alignment:
Q  61 agttctaaggccactattcaaaccacagatactgcagaaatgttgattgattaggaatattatattttcccaactt 136  Q
    |||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||| ||||||||| |||||    
T  24102191 agttctaaggccacgattcaaaccacagataccgcggaaatgttgattgattacgaatataatattttcctaactt 24102266  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 24109474 - 24109508
Alignment:
Q  7 agcatagggagacgttcgataaagggtgggagact 41  Q
    ||||||||| |||||||||||||||||||||||||    
T  24109474 agcatagggcgacgttcgataaagggtgggagact 24109508  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Original strand, 24106907 - 24106939
Alignment:
Q  293 tagcagagagaattgaatttatcagtctcactt 325  Q
    ||||||||||| |||||||||||||||||||||    
T  24106907 tagcagagagacttgaatttatcagtctcactt 24106939  T

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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 4261242 - 4261164
Alignment:
Q  58 aacagttctaaggccactattcaaaccacagatactgcagaaatgttgattgattaggaatattatattttcccaactt 136  Q
    ||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||  |||||||| |||||    
T  4261242 aacagttctaaggccaccattcaaaccatagataccgcagaaatgttgattgattaggaatatagtattttcctaactt 4261164  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 4301026 - 4300967
Alignment:
Q  61 agttctaaggccactattcaaaccacagatactgcagaaatgttgattgattaggaatat 120  Q
    |||||||| ||||| |||||||||||||||||| | ||||||||||||||||||||||||    
T  4301026 agttctaaagccaccattcaaaccacagatacttctgaaatgttgattgattaggaatat 4300967  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 4267983 - 4267934
Alignment:
Q  184 aaatggtcatcagaaagaaatttaaagtaattttagaaaatttgaaacag 233  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  4267983 aaatggtcatcagacagaaatttaaagtaatgttagaaaatttgaaacag 4267934  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 136
Target Start/End: Complemental strand, 4268115 - 4268040
Alignment:
Q  61 agttctaaggccactattcaaaccacagatactgcagaaatgttgattgattaggaatattatattttcccaactt 136  Q
    |||||||||||||| |||||||| | |||||| || | |||||||||||||||| ||||| ||||||||| |||||    
T  4268115 agttctaaggccaccattcaaacaatagataccgcggcaatgttgattgattagaaatataatattttcctaactt 4268040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 4261106 - 4261046
Alignment:
Q  155 aattttaaagtaatgttgattgatgtttcaaatggtcatcagaaagaaatttaaagtaatttt 217  Q
    ||||||||||||||||| |  ||| ||| |||||||||||||| |||||||||||||||||||    
T  4261106 aattttaaagtaatgttta--gatatttgaaatggtcatcagacagaaatttaaagtaatttt 4261046  T

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