View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16425_low_12 (Length: 344)
Name: NF16425_low_12
Description: NF16425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16425_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 50751262 - 50750936
Alignment:
| Q |
1 |
atggaccatcaaactgaacttttccttctt-gtcatgatgaccaataaaaatgatatacattccttgtgatcaaataatatagattaatatgtgttgctt |
99 |
Q |
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|||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50751262 |
atggaccatcaaactgaaattttccttctttgtcatgatgaccaataaaaatgatgtacattccttgtgatcaaataatatagattaatatgtgttgctt |
50751163 |
T |
|
| Q |
100 |
aactttgtttttcctattttgtctttgacagtactctgtattttaactgcnnnnnnnntgtatccctcaccctatatgcgaggatgtaaactccatgcaa |
199 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
50751162 |
aactttgtttttcctattttatctttgacagtactctgtattttaactgcaaaaaaaatgtatccctcgccctatatgcgaggatgtaaactccatgcaa |
50751063 |
T |
|
| Q |
200 |
tgttctcccgtgaagatatatataacaagctaacagagcccacatacataaattagtggcattgcaactgcaacatttatggtaccaaaagatgacccca |
299 |
Q |
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||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50751062 |
tgttctcccttgaagatatatatagcaagctaatagagcccacatacataaattagtggcattgcaactgcaacatttatggtaccaaaagatgacccca |
50750963 |
T |
|
| Q |
300 |
gcaattttatttataataagctaatag |
326 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
50750962 |
gcaattttatttataataagctaatag |
50750936 |
T |
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