View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16425_low_13 (Length: 310)
Name: NF16425_low_13
Description: NF16425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16425_low_13 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 10284707 - 10284413
Alignment:
| Q |
18 |
cgcataataagtaatcaagaatcttacccttacaaaaattgtcttgtcgtgaata-ttttactagttgaaactaagctatataggtcaagaactgaattt |
116 |
Q |
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| T |
10284707 |
cgcataataagtaatcaagaatcttaccattacaaaaattgtcttgtcgtgaataattttactagttgaaactaagctatataactcaagaactgaattt |
10284608 |
T |
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| Q |
117 |
-gatgcgctttactagtatcacaagaaattaacttgattaattatttatgttgagaacttgttgaagcaaatcgaaaattaaatatgatgcatcgcgatt |
215 |
Q |
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| T |
10284607 |
tgatgcgctttactagtatcacaagaaattaacttgattaattatttatgttgagaacttattgaagcaaatcgaaacttaaatatgatgcatcacgatt |
10284508 |
T |
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| Q |
216 |
tattcaaccaacacaacatcaagatcatagaatttttattcataatttggagaacaaaaacactatttcattctccgtttttcacttacattctt |
310 |
Q |
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| T |
10284507 |
tattcaaccaacaaaacatcaagatcatagaatttttattcataatttggagaacaaaaacactatttcattctccgtttttcactcacattctt |
10284413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 37 - 310
Target Start/End: Complemental strand, 10265677 - 10265407
Alignment:
| Q |
37 |
aatcttacccttacaaaaattgtcttgtcgtgaatattttactagttgaaactaagctatataggtcaagaactgaattt-gatgcgctttactagtatc |
135 |
Q |
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| T |
10265677 |
aatcttaccattacaaaaattgtcttgtcgtgaatattttactagttgaaactaagctatataactcaagaactgaattttgatgcgctttactagtctc |
10265578 |
T |
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| Q |
136 |
acaagaaattaacttgattaattatttatgttgagaacttgttgaagcaaatcgaaaattaaatatgatgcatcgcgatttattcaaccaacacaacatc |
235 |
Q |
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| T |
10265577 |
acaagaaattaacttgatta----tttatgttgagaacttgttgaagcaaatcgaaaattaaatatgatgcatcacgatttattcaaccaacacaacatc |
10265482 |
T |
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| Q |
236 |
aagatcatagaatttttattcataatttggagaacaaaaacactatttcattctccgtttttcacttacattctt |
310 |
Q |
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| T |
10265481 |
aagatcatagaatttttattcataatttggagaacaaaaacactatttcattctccgtttttcactcacattctt |
10265407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 263
Target Start/End: Complemental strand, 10255195 - 10255134
Alignment:
| Q |
202 |
gatgcatcgcgatttattcaaccaacacaacatcaagatcatagaatttttattcataattt |
263 |
Q |
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| T |
10255195 |
gatgtatcacgatttagtcaaccaacacaacatctaaatcatagaaatcttattcataattt |
10255134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 10256099 - 10256054
Alignment:
| Q |
141 |
aaattaacttgattaattatttatgttgagaacttgttgaagcaaa |
186 |
Q |
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| T |
10256099 |
aaattaacttggttagttatttatgttgagaacctgttgaagcaaa |
10256054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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