View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16425_low_18 (Length: 228)
Name: NF16425_low_18
Description: NF16425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16425_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 222
Target Start/End: Complemental strand, 45910029 - 45909829
Alignment:
| Q |
22 |
acgcaaactcttaaagcaagagatttataattggtttgtttttcgtttccttctctgtttcaccttccgagaattctggtcttaacttgtcattattgga |
121 |
Q |
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| T |
45910029 |
acgcaaactcttaaagcaagagatttataattggtttgtttttcgtttccttctctgtttcaccttccgtgaattctggtcttaacttgtcattattgga |
45909930 |
T |
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| Q |
122 |
taaattacaagtctcttgggtaaacaaataaattttacataaattgtaagtttgcatcttacgaacaaagaagtccttatataattatagatattcttcg |
221 |
Q |
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| T |
45909929 |
taaattacaagtctcttgggtaaacaaataaattttacataaattgtaagtttgcatcttacgaacaaagaagtccttatataattatagatattcgtcg |
45909830 |
T |
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| Q |
222 |
a |
222 |
Q |
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| T |
45909829 |
a |
45909829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 20272859 - 20272818
Alignment:
| Q |
36 |
agcaagagatttataattggtttgtttttcgtttccttctct |
77 |
Q |
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| T |
20272859 |
agcaaaagatttataattggtttgttttttgtttccttctct |
20272818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 3981700 - 3981738
Alignment:
| Q |
44 |
atttataattggtttgtttttcgtttccttctctgtttc |
82 |
Q |
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| T |
3981700 |
atttataattggtttgttttttgtttccttctatgtttc |
3981738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 7975626 - 7975578
Alignment:
| Q |
113 |
attattggataaattacaagtctcttgggtaaacaaataaattttacat |
161 |
Q |
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| T |
7975626 |
attagtggataaattacgagtctcttggataaagaaataaattttacat |
7975578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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