View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16425_low_19 (Length: 217)
Name: NF16425_low_19
Description: NF16425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16425_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 38121507 - 38121706
Alignment:
| Q |
1 |
tttgttttatgcttttgagtttttgtgtgtgctgatttaatgatcaatttagtatatacctaatagactaatacttattacttgtgatatttattcagaa |
100 |
Q |
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| T |
38121507 |
tttgttttatgcttttgagtttttgtgtgtgctgatttaatgatcaatttagtatatacctaatagactaatacttattacttgtgatatttattcagaa |
38121606 |
T |
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| Q |
101 |
tatgagttcacaagagaacaaagaatgtttgcccccaccacctcccattgttccacccaatgttaaaccaataaagatagaacaggagcatttaaagaag |
200 |
Q |
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| T |
38121607 |
tatgagttcacaagagaacaaagaatgtttgcccccaccacctcccattgttccacccaatgttaaaccaataaagatagaacaggagcatttaaagaag |
38121706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 38113081 - 38113126
Alignment:
| Q |
106 |
gttcacaagagaacaaagaatgtttgcccccaccacctcccattgt |
151 |
Q |
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| T |
38113081 |
gttcacaggagaacgaagaatgtttacccccgccacctcccattgt |
38113126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 14914008 - 14914076
Alignment:
| Q |
132 |
cccccaccacctcccattgttccacccaatgttaaaccaataaagatagaacaggagcatttaaagaag |
200 |
Q |
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| T |
14914008 |
cccccaccacctcccactgttcctcgaaatgttaaaccagtaattattgaacaagagcatgtaaagaag |
14914076 |
T |
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