View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16425_low_3 (Length: 572)
Name: NF16425_low_3
Description: NF16425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16425_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 48 - 436
Target Start/End: Original strand, 42229696 - 42230085
Alignment:
| Q |
48 |
aaaacacaaacacgaacaccagacacatactaactattatacatttgctatgcattatgaataggttggcttgcaagcagatacacataggaggacatag |
147 |
Q |
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| T |
42229696 |
aaaacacgaacacgaacaccagacacatactaactataatacatttgctatgcattatgaataggttggcttgcaagcagatacacataggaggacatag |
42229795 |
T |
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| Q |
148 |
aggatggaggctgaagatggtcgaggcatttataatcatactaacattcacacaattgttgtgcttattgctgacgcatgcaggactgtacaatagcaga |
247 |
Q |
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| T |
42229796 |
aggatggaggctgaagatggtcgaggcatttataatcatactaacattcacacaattgttgtgcttattgctgacccatgcaggactgtacaatagcaga |
42229895 |
T |
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| Q |
248 |
tatggtccaggttatcgtgacactgactatggtgttggaggaggagctactggagatccaatgcacaagggtggtcctgttggtggcacacgtgtttaaa |
347 |
Q |
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| T |
42229896 |
tatggtccaggttatcgtgacactgactatggtgttggaggaggagctactggagatccaatgcacaagggtggtcctgttggtggcactcgtgtttaaa |
42229995 |
T |
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| Q |
348 |
taaacatcattatccatataactacactttgtttcttg-tttttaataatattgtagtctcctagtttgggacacgggactatgttcctg |
436 |
Q |
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| T |
42229996 |
taaatatcattatccatataactacactttgtttcttgttttttaataatattgtagtttcctagtttgggacacgggactatgttcctg |
42230085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 464 - 564
Target Start/End: Original strand, 42230113 - 42230213
Alignment:
| Q |
464 |
gggtttgttgtatgaagagtgtcactttgtagcattacgttgtgtataccaatggctgcaattaatcatgtatttgcaatttgcttatttctgttcttct |
563 |
Q |
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| T |
42230113 |
gggtttgttgtatgaagagtgtcactttgtagcattacattgtgtataccaatggctgcaattaatcatgtatttgcaatttgcttatttctgttcttct |
42230212 |
T |
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| Q |
564 |
c |
564 |
Q |
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| T |
42230213 |
c |
42230213 |
T |
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