View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16425_low_4 (Length: 572)
Name: NF16425_low_4
Description: NF16425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16425_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 20208683 - 20209097
Alignment:
| Q |
1 |
caacaaaaatgaaaatgtgcatgcataccatcatcgtcactctcgtcaaacaaaccatcagcgcaccctcctcttctcggtttcattccattctttctct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
20208683 |
caacaaaaatgaaaatgtgcatgcataccttcatcgtcactctcgtcaaacaaaccatcagcgcaccctcctcttttcggtttcattccattctttctct |
20208782 |
T |
|
| Q |
101 |
aattgccacccggacttgtaatcagttcggtcgtgcaaaaacttgcatgaatcgccgtagccacaatatccggtctccttgaagtctttgcatacgtcgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
20208783 |
aattgccacccggacttgtaatcagttcggtcgtgcaaaaacttgcatgaatcgccgtagccacaatatccggtctccttgaagtctttgcataggtcgg |
20208882 |
T |
|
| Q |
201 |
gttgataatcgattcctgatgaaactctaatatgagttgaaggtcggagatgaccgtgtgtcgacccaccggttccctcgagactcgtttcagtctccaa |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20208883 |
gttgataatcgattcttgatgaaactctaatatgagttgaaggtcggagaggaccgtgtgtcgacccaccagttccctcgagactcgtttcagtctccaa |
20208982 |
T |
|
| Q |
301 |
agttgctgttgctttgctatcatgttgaacttgaatctcttttgaagattcaaaatgaaagctaagtttcttggatgcttcattaggtttagcggtggaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20208983 |
agttgctgttgctttgctatcatgttgaacttgaatctcttttgaagattcaaaatgaaagctaagtttcttggatgcttcattaggtttagcggtggaa |
20209082 |
T |
|
| Q |
401 |
aagaataacccattg |
415 |
Q |
| |
|
||||||||||||||| |
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| T |
20209083 |
aagaataacccattg |
20209097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 50 - 415
Target Start/End: Original strand, 20228440 - 20228805
Alignment:
| Q |
50 |
acaaaccatcagcgcaccctcctcttctcggtttcattccattctttctctaattgccacccggacttgtaatcagttcggtcgtgcaaaaacttgcatg |
149 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20228440 |
acaaaccatcagcgcaccctcctcttttcggtttcattccattctttctctaattgccacccggacttgtaatcagttcggtcgtgcaaaaacttgcatg |
20228539 |
T |
|
| Q |
150 |
aatcgccgtagccacaatatccggtctccttgaagtctttgcatacgtcgggttgataatcgattcctgatgaaactctaatatgagttgaaggtcggag |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
20228540 |
aatcgccgtagccacaatatccggtctccttgaagtctttgcataggtcgggttgataatcgattcttgatgaaactctaatatgagttgaaggtcggag |
20228639 |
T |
|
| Q |
250 |
atgaccgtgtgtcgacccaccggttccctcgagactcgtttcagtctccaaagttgctgttgctttgctatcatgttgaacttgaatctcttttgaagat |
349 |
Q |
| |
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| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20228640 |
aggaccgtgtgtcgacccaccagttccctcgagactcgtttcagtctccaaagttgctgttgctttgctatcatgttgaacttgaatctcttttgaagat |
20228739 |
T |
|
| Q |
350 |
tcaaaatgaaagctaagtttcttggatgcttcattaggtttagcggtggaaaagaataacccattg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20228740 |
tcaaaatgaaagctaagtttcttggatgcttcattaggtttagcggtggaaaagaataacccattg |
20228805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 20211951 - 20211999
Alignment:
| Q |
1 |
caacaaaaatgaaaatgtgcatgcataccatcatcgtcactctcgtcaa |
49 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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|
| T |
20211951 |
caacaaaaatgaaaatgtgaatgcataccttcatcgtcactctcgtcaa |
20211999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 44293195 - 44293609
Alignment:
| Q |
1 |
caacaaaaatgaaaatgtgcatgcataccatcatcgtcactctcgtcaaacaaaccatcagcgcaccctcctcttctcggtttcattccattctttctct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
44293195 |
caacaaaaatgaaaatgtgcatgcataccttcatcgtcactctcgtcaaacaaaccatcagcgcaccctcctcttttcggtttcattccattctttctct |
44293294 |
T |
|
| Q |
101 |
aattgccacccggacttgtaatcagttcggtcgtgcaaaaacttgcatgaatcgccgtagccacaatatccggtctccttgaagtctttgcatacgtcgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
44293295 |
aattgccacccggacttgtaatcagttcggtcgtgcaaaaacttgcatgaatcgccgtagccacaatatccggtctccttgaagtctttgcataggtcgg |
44293394 |
T |
|
| Q |
201 |
gttgataatcgattcctgatgaaactctaatatgagttgaaggtcggagatgaccgtgtgtcgacccaccggttccctcgagactcgtttcagtctccaa |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
44293395 |
gttgataatcgattcttgatgaaactctaatatgagttgaaggtcggagaggaccgtgtgtcgacccaccagttccctcgagactcgtttcagtctccaa |
44293494 |
T |
|
| Q |
301 |
agttgctgttgctttgctatcatgttgaacttgaatctcttttgaagattcaaaatgaaagctaagtttcttggatgcttcattaggtttagcggtggaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44293495 |
agttgctgttgctttgctatcatgttgaacttgaatctcttttgaagattcaaaatgaaagctaagtttcttggatgcttcattaggtttagcggtggaa |
44293594 |
T |
|
| Q |
401 |
aagaataacccattg |
415 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
44293595 |
aagaataacccattg |
44293609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 74 - 301
Target Start/End: Original strand, 44484498 - 44484722
Alignment:
| Q |
74 |
ttctcggtttcattccattctttctctaattgccacccggacttgtaatcagttcggtcgtgcaaaaacttgcatgaatcgccgta-gccacaatatccg |
172 |
Q |
| |
|
||||||||||| ||||||| || || |||||||| ||||||||||| |||||||||||||||||||| ||||||||| ||| |||||||||||| |
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|
| T |
44484498 |
ttctcggtttccctccattccttatccaattgcca----gacttgtaatcggttcggtcgtgcaaaaacttacatgaatcgttgtatgccacaatatcca |
44484593 |
T |
|
| Q |
173 |
gtctccttgaagtctttgcatacgtcgggttgataatcgattcctgatgaaactctaatatgagttgaaggtcggagatgaccgtgtgtcgacccaccgg |
272 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
44484594 |
gtctccttgaagtctttgcataggtcgggttgataatcgattcttgatgaaactctaatatgagttgaaggtcggagaggaccgtgtgtcaacccaccgg |
44484693 |
T |
|
| Q |
273 |
ttccctcgagactcgtttcagtctccaaa |
301 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
44484694 |
ttccctcgagactcgtttcagtctccaaa |
44484722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 290 - 393
Target Start/End: Complemental strand, 44663087 - 44662984
Alignment:
| Q |
290 |
tcagtctccaaagttgctgttgctttgctatcatgttgaacttgaatctcttttgaagattcaaaatgaaagctaagtttcttggatgcttcattaggtt |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| |||||| ||| ||||||| |||| |
|
|
| T |
44663087 |
tcagtctccaaagttgctgttgctttgctatcatgttgaacttgaatctctttagaagactcgaaatgaaagctaggtttctcagattcttcattcggtt |
44662988 |
T |
|
| Q |
390 |
tagc |
393 |
Q |
| |
|
|||| |
|
|
| T |
44662987 |
tagc |
44662984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 44296463 - 44296511
Alignment:
| Q |
1 |
caacaaaaatgaaaatgtgcatgcataccatcatcgtcactctcgtcaa |
49 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
44296463 |
caacaaaaatgaaaatgtgaatgcataccttcatcgtcactctcgtcaa |
44296511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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