View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16425_low_9 (Length: 371)
Name: NF16425_low_9
Description: NF16425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16425_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 31573372 - 31573025
Alignment:
| Q |
18 |
catgatctaggtttggttatacgatagtagtattgggaaggaactatatacgnnnnnnnnn-actgtaccacnnnnnnntattactctctttcacaaaat |
116 |
Q |
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| T |
31573372 |
catgatctaggtttggttatacaatagtagtattgagaaggaactatatacgttttttttttactataccacaaaaaaagattactctctttcacaaaat |
31573273 |
T |
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| Q |
117 |
aggtattaaagtgccatgatttttgcattactaataggaaaataatttttggacaccga-tttctcacnnnnnnnn-atatagataggaaataggttttg |
214 |
Q |
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| T |
31573272 |
aggtattaaagtgccatgatttttgcattactaatgggaaaataaattttggacaccgaatttctcactttttttttatatagataggaaataggttttg |
31573173 |
T |
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| Q |
215 |
gtggtannnnnnngtggtacagtagaaaatagccactatatccatacgagtagtactgctagcataaccctgactaggtcatgctgtgctagcctcactc |
314 |
Q |
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| T |
31573172 |
gtggtatttttttgtggtacagtaaaaaatagccgctatatccatacaagtagtactgctagcataaccctgactaggtcatgctgtgctagcctcactc |
31573073 |
T |
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| Q |
315 |
cttcctatttggagaccaatatatcatcaaagttacctaccttcttctca |
364 |
Q |
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| T |
31573072 |
cttcctatttggagacca--atatcatctaagttacctaccttcttctca |
31573025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 38348544 - 38348589
Alignment:
| Q |
279 |
taaccctgactaggtcatgctgtgctagcctcactccttcctattt |
324 |
Q |
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| T |
38348544 |
taaccttgactaggtcatgctgtgacagcctcactctttcctattt |
38348589 |
T |
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