View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16426_high_2 (Length: 356)
Name: NF16426_high_2
Description: NF16426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16426_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 3 - 338
Target Start/End: Complemental strand, 40127290 - 40126950
Alignment:
| Q |
3 |
aaggcagtatgatgggacccatgtttcggtagatagataccaggggagagattactgggtggtgaatgtgagaagccaagatcgtcctaagttactgttt |
102 |
Q |
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| T |
40127290 |
aaggcagtatgatgggacccatgtttcggtggatagataccaggggagagattactgggtggtgaatgtgagaagccgagatcgtcctaagttactgttt |
40127191 |
T |
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| Q |
103 |
gatattgtgtgcatgctcacggacatgcaatatgaggtgtttcatgcggctgttacctcgaacagcccaatggcagaacaggtacaccggatttttcaat |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40127190 |
gatattgtgtgcatgctcacggacatgcaatatgaggtgtttcatgcggctgttacctcgaacagccccatggcagaacaggtacaccggatttttcaat |
40127091 |
T |
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| Q |
203 |
taattatttgc-aggccaaaaggtatataggtgcaattatttatgtggtg----nnnnnnnncctctgttttctaatcacaattcaattaatgtgtggcc |
297 |
Q |
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||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40127090 |
taattatctgcaaggccaaaaggtatataggtgcaattatttatgtggtgtttttttttttctctctgttttctaatcacaattcaattaatgtgtggcc |
40126991 |
T |
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| Q |
298 |
ataaacatgaatagactgttaaacaaaatgataaggttatc |
338 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
40126990 |
ataaacatgaatagactgttaaacaaaatgataaggttatc |
40126950 |
T |
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