View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16426_high_3 (Length: 285)
Name: NF16426_high_3
Description: NF16426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16426_high_3 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 1898268 - 1898552
Alignment:
| Q |
1 |
cgatggagttagttgttacggcgtcggtgaaaatagagtcgagtaggtaagactgtagaacattgttggttgagcgattgggatggacgaggtacgtatt |
100 |
Q |
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| T |
1898268 |
cgatggagttagttgttacgccgtcggtgaaaatagagtcgagtaggtaagactgtagaacattgttgcttgagcgattgggatggacgaggtacgtatt |
1898367 |
T |
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| Q |
101 |
tgagaggcggaggtgtttgatggcgaatttgggatcggagataagataattccatgacttggagacagatttgagttgaaggaggtgcttcactggaagt |
200 |
Q |
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| T |
1898368 |
tgagaggcggaggtgtttgatggcgaatttgggatcggagataagataattccatgacttggagacagatttgagttgaaggaggtgtttcactggaagt |
1898467 |
T |
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| Q |
201 |
ctagttagaatttctgaaatgagatccaaagtaagagtgggaagttgtggtggcgcgtgaagtgaacacgatgatgttagggttt |
285 |
Q |
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| T |
1898468 |
gtagttagaatttctgaaatgagatccaaagtaagagtgggaagttgtggtggcgcgtgaagtgaacacgatgatgttagggttt |
1898552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 1907714 - 1907998
Alignment:
| Q |
1 |
cgatggagttagttgttacggcgtcggtgaaaatagagtcgagtaggtaagactgtagaacattgttggttgagcgattgggatggacgaggtacgtatt |
100 |
Q |
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| T |
1907714 |
cgatggagttagttgttacgccgtcggtgaaaatagagtcgagtaggtaagactgtagaacattgttgcttgagcgattgggatggacgaggtacgtatt |
1907813 |
T |
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| Q |
101 |
tgagaggcggaggtgtttgatggcgaatttgggatcggagataagataattccatgacttggagacagatttgagttgaaggaggtgcttcactggaagt |
200 |
Q |
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| T |
1907814 |
tgagaggcggaggtgtttgatggcgaatttgggatcggagataagataattccatgacttggagacagatttgagttgaaggaggtgtttcactggaagt |
1907913 |
T |
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| Q |
201 |
ctagttagaatttctgaaatgagatccaaagtaagagtgggaagttgtggtggcgcgtgaagtgaacacgatgatgttagggttt |
285 |
Q |
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| T |
1907914 |
gtagttagaatttctgaaatgagatccaaagtaagagtgggaagttgtggtggcgcgtgaagtgaacacgatgatgttagggttt |
1907998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 5 - 285
Target Start/End: Complemental strand, 2931365 - 2931085
Alignment:
| Q |
5 |
ggagttagttgttacggcgtcggtgaaaatagagtcgagtaggtaagactgtagaacattgttggttgagcgattgggatggacgaggtacgtatttgag |
104 |
Q |
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| T |
2931365 |
ggagttagttgttacatcgtcggtgaaaatagagtcgagtaggtaagactgtagaacattgttgcttgagcgattgggatggacgaggtacgtatttgag |
2931266 |
T |
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| Q |
105 |
aggcggaggtgtttgatggcgaatttgggatcggagataagataattccatgacttggagacagatttgagttgaaggaggtgcttcactggaagtctag |
204 |
Q |
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| T |
2931265 |
aggcggaggtgttttatggcgaatttgggatcggagataagataattccatgacttggagacagatttgagttgaaggaggtgtttcactggaagtctag |
2931166 |
T |
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| Q |
205 |
ttagaatttctgaaatgagatccaaagtaagagtgggaagttgtggtggcgcgtgaagtgaacacgatgatgttagggttt |
285 |
Q |
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| T |
2931165 |
ttagaatttctgaaatgagatccaaagtaacagtgggaagttgtggtggcgcgtgaagtgaacacgatgatgttagggttt |
2931085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 84 - 282
Target Start/End: Original strand, 1891747 - 1891945
Alignment:
| Q |
84 |
tggacgaggtacgtatttgagaggcggaggtgtttgatggcgaatttgggatcggagataagataattccatgacttggagacagatttgagttgaagga |
183 |
Q |
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| T |
1891747 |
tggacgaggtgcgtatttgagagacggaggtgtttcatggcgaacttggaatcggagattagagaattccatgacttgcagacagatcggagttgaagga |
1891846 |
T |
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| Q |
184 |
ggtgcttcactggaagtctagttagaatttctgaaatgagatccaaagtaagagtgggaagttgtggtggcgcgtgaagtgaacacgatgatgttaggg |
282 |
Q |
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| T |
1891847 |
ggagcttcactggaagtctagttagaatttctgaaatgagatccaaaggaagagtgggaagttgtggtggcgcgtgaagcgacaacgatgatgttaggg |
1891945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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