View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16426_low_7 (Length: 259)
Name: NF16426_low_7
Description: NF16426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16426_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 31384508 - 31384733
Alignment:
| Q |
19 |
tcatgttgtttttatttaataattatactttctagttctgcatatattaagtgattagttattggtctgttccttgcattaagtgttcagttattggtct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31384508 |
tcatgttgtttttatttaataattatactttctagttctgcatatattaagtgattagttattggtctgttccttgcattaagtgttcagttattggtct |
31384607 |
T |
|
| Q |
119 |
gttccttgcatgatgatgatattgtggtaagctaacttggaagcttagaaatgtgtattgtggattttctcttcccttccctggttttgcaaacctctgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31384608 |
gttccttgcatgatgatgatattgtggtaagctaacttggaagcttagaaatgtgtattgtggattttctcttcccttccctggttttgcaaacctctgt |
31384707 |
T |
|
| Q |
219 |
aatcttgtactgtttaatgttatttt |
244 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
31384708 |
aatcttgtactgtttaatgttatttt |
31384733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University