View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16426_low_8 (Length: 243)
Name: NF16426_low_8
Description: NF16426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16426_low_8 |
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| [»] scaffold0020 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 39347795 - 39347601
Alignment:
| Q |
17 |
aacaggttacatttcaaagaagaagattaagaaacttaaaggcgtgaaagctaaggaactcatgttatggccacctgttaatgagattactgttgatgaa |
116 |
Q |
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| T |
39347795 |
aacaggttacatttcaaagaagaagattaagaaacttaaaggcgtgaaagctaaggaactcatgttatggccacctgttaatgagattactgttgatgaa |
39347696 |
T |
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| Q |
117 |
caaccaactgggaagattcatttcaagagtcttgctggtatcactaagactttccctgttgaagcttttgctgctggccagtaatcatatcatat |
211 |
Q |
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| T |
39347695 |
caaccaactgggaagattcatttcaagagtcttgctggtatcactaagactttccctgttgaagcttttgctgctggccagtaatcatatcatat |
39347601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 39345608 - 39345420
Alignment:
| Q |
17 |
aacaggttacatttcaaagaagaagattaagaaacttaaaggcgtgaaagctaaggaactcatgttatggccacctgttaatgagattactgttgatgaa |
116 |
Q |
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| T |
39345608 |
aacaggttacatttcaaagaagaatattaagatgcttaaaggtgttaatgttaaagaactcatgttacggcctcctatcaatgagattattgttgatgaa |
39345509 |
T |
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| Q |
117 |
caaccaactgggaagattcatttcaagagtcttgctggtatcactaagactttccctgttgaagcttttgctgctggccagtaatcata |
205 |
Q |
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| T |
39345508 |
gaaccaactggaaaaattcatttcaagagttatggtggtatcaccaagactttccctgttgaagcttttgctgtttgccagtaatcata |
39345420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 201
Target Start/End: Complemental strand, 4792574 - 4792409
Alignment:
| Q |
36 |
aagaagattaagaaacttaaaggcgtgaaagctaaggaactcatgttatggccacctgttaatgagattactgttgatgaacaaccaactgggaagattc |
135 |
Q |
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| T |
4792574 |
aagaaaattaagaagctcaaaggggtgaaagccaaagaactcatgctttggcctcctgtcaatgaaattaatatagatgaaacactcaatggaaagattc |
4792475 |
T |
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| Q |
136 |
atttcaagagtcttgctggtatcactaagactttccctgttgaagcttttgctgctggccagtaat |
201 |
Q |
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| T |
4792474 |
acttcaagagtttagctggtatcaccaaaactttcccagttgaggcttttgctacgggacagtaat |
4792409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 61 - 211
Target Start/End: Original strand, 2486 - 2634
Alignment:
| Q |
61 |
tgaaagctaaggaactcatgttatggccacctgttaatgagattactgttgatgaacaaccaactgggaagattcatttcaagagtcttgctggtatcac |
160 |
Q |
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| T |
2486 |
tgaaagctaaggaactcatgtcatgccctcctgttattgagat-act-ttgatgaacaaccaactgggaagattcatttcaagagtgttgcgggtatcac |
2583 |
T |
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| Q |
161 |
taagactttccctgttgaagcttttgctgctggccagtaatcatatcatat |
211 |
Q |
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| T |
2584 |
caagactttccctcttgaagcttttgctggtggccaataatcatatcatat |
2634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 144
Target Start/End: Complemental strand, 8738 - 8646
Alignment:
| Q |
51 |
cttaaaggcgtgaaagctaaggaactcatgttatggccacctgttaatgagattactgttgatgaacaaccaactgggaagattcatttcaaga |
144 |
Q |
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| T |
8738 |
cttaaaggtgtgaaagctaaggaattcatgtcatgctctcctgttactcatag-attgttgatgaacaaccaactaggaacattcatttcaaga |
8646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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