View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16427_high_1 (Length: 739)
Name: NF16427_high_1
Description: NF16427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16427_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 575; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 11 - 718
Target Start/End: Complemental strand, 43062917 - 43062214
Alignment:
| Q |
11 |
aatatcaacaacatatcttttggtgcgattcctctattatttctggggaaggtacaaaccattcataatatttttaaaatgttcctcagattcaaatatt |
110 |
Q |
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| T |
43062917 |
aatatcaacaacatatcttttggtgcgattcctctattatttttggggaaggtacaaaccattcataatatttttaaaatgttcctcagattcaaatatt |
43062818 |
T |
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| Q |
111 |
ggctatagtcacccttatgattattcaactctgtaataagtgttctacaaataatagaatgtctttcttcaatcataccatccactttgacatccttaga |
210 |
Q |
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| T |
43062817 |
agttatagtcactcttatgattactcaaccctgtaataagtgttctacaaataatagaatgtctttcttcaatcataccatccactttgacatccttaga |
43062718 |
T |
|
| Q |
211 |
tttcactctgcagcctgtgatgcatttaattagttctaacgtttttagcaatataaaactaacaaattgatgtggtaattttagggaaaacaacaacgac |
310 |
Q |
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| T |
43062717 |
tttcactctggagcttgtcatgcattta----gttctaatgtttttagcaatataaaattaacaagttgatgtggtaattttagggaaaacaacaacgac |
43062622 |
T |
|
| Q |
311 |
aacattcatcagtgtaatatctttgtcagtgacattcacatttggtttagaaactatggatccaacaatagtggagcgaacgacaattaactaccgtaag |
410 |
Q |
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| T |
43062621 |
aacattcatcagtgtaatatctttgttagtgacattcacatttggtttagaaactatggatccaacaatagtggagcgaacgacaattaactaccgtaag |
43062522 |
T |
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| Q |
411 |
acaacgaatagtggttaattgcgatgagagtgttttctttgaatggtctatgtagagagttgagaatcataaattcattaccctaaattaaaccacttca |
510 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43062521 |
acaacgaatagtggttaattgcgatgagtgtattttctttgaatggtctgtgtagagagttgagaatcataaattcattacctcaaattaaaccacttca |
43062422 |
T |
|
| Q |
511 |
agtttgattggattgattctgatttgactcaaactactaaaaaatattcgacttagattggatcatgaggtcattcaaatcaacctatatacaggaatca |
610 |
Q |
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| T |
43062421 |
agtttgattggattgattttaatttgactaaaattactaaaaaatattcgacttagattggatcatgaggtcattcgaatcgacctacatacatgaatca |
43062322 |
T |
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| Q |
611 |
catttgaaaataagaatttagtttttctaattcgtgtgggtttgaatctgcatctcaaatttcttatttttagctcaaatcaattgaattatgccatgcc |
710 |
Q |
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| T |
43062321 |
catttaaaaataagaatttagtttttctaattcgtgtgggtttgaatctacatctcaaatttcttatttttagcttaaatcaattgaattatgccatgcc |
43062222 |
T |
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| Q |
711 |
actccaac |
718 |
Q |
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| T |
43062221 |
actccaac |
43062214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 24591539 - 24591588
Alignment:
| Q |
189 |
catccactttgacatccttagatttcactctgcagcctgtgatgcattta |
238 |
Q |
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||||||||||||||| ||||||||| | ||||||| || ||||||||||| |
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| T |
24591539 |
catccactttgacattcttagatttgagtctgcagtctctgatgcattta |
24591588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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