View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16427_high_13 (Length: 337)
Name: NF16427_high_13
Description: NF16427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16427_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 44 - 256
Target Start/End: Complemental strand, 78930 - 78718
Alignment:
| Q |
44 |
taagctcaaaaagatcatccctaaaggacacacagctatcataatcaactcaataatgaaaagaatacacgaattatgcaagttgaggccacgtcgtata |
143 |
Q |
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| T |
78930 |
taagctcaaaaagatcatccctaaaggacacactgctatcataatcaacgcaataatgaaaagaatacacgaattatgcaaggtgaggtcacgtcctata |
78831 |
T |
|
| Q |
144 |
attagctcacatgttcaacatcaaactctatgagatatctcctatatttcactcgcaacttgttgacaatcttctccaactcagatacaggattcggttt |
243 |
Q |
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| T |
78830 |
attagctcacatgttcaacatcaaactctatgagatatgtcctatatttcacccgcaacttattgacaatcttctccaactctgatacaagaatctgttt |
78731 |
T |
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| Q |
244 |
caagggcactggc |
256 |
Q |
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||||||||||||| |
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| T |
78730 |
caagggcactggc |
78718 |
T |
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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 24468119 - 24468196
Alignment:
| Q |
161 |
acatcaaactctatgagatatctcctatatttcactcgcaacttgttgacaatcttctccaactcagatacaggattc |
238 |
Q |
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| T |
24468119 |
acattaaactctatgtgatatgtcctatatttcacccgcaactcattgacaatcttgtccaactcagatacaggattc |
24468196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 164023 - 164102
Alignment:
| Q |
157 |
ttcaacatcaaactctatgagatatctcctatatttcactcgcaacttgttgacaatcttctccaactcagatacaggatt |
237 |
Q |
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| T |
164023 |
ttcaacatcaaactctatgagataggtcctatatttcac-cgcaactcattgataatcttgtccaactcagatacatgatt |
164102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 18208386 - 18208307
Alignment:
| Q |
157 |
ttcaacatcaaactctatgagatatctcctatatttcactcgcaacttgttgacaatcttctccaactcagatacaggatt |
237 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||||||| |||| |||||| ||||||||||||||| |||| |
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| T |
18208386 |
ttcaacatcaaactctatgagataggtcctatatttcac-cgcaactcattgataatcttgtccaactcagatacatgatt |
18208307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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