View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16427_high_17 (Length: 256)

Name: NF16427_high_17
Description: NF16427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16427_high_17
NF16427_high_17
[»] chr3 (6 HSPs)
chr3 (13-81)||(54765832-54765902)
chr3 (101-165)||(22440386-22440450)
chr3 (184-235)||(22465652-22465703)
chr3 (180-233)||(22434406-22434460)
chr3 (180-235)||(22633164-22633220)
chr3 (175-235)||(22448433-22448493)
[»] chr2 (1 HSPs)
chr2 (13-81)||(1078181-1078251)
[»] chr5 (2 HSPs)
chr5 (13-81)||(27434027-27434097)
chr5 (17-79)||(27433014-27433078)
[»] chr4 (1 HSPs)
chr4 (13-81)||(54960969-54961039)
[»] scaffold0206 (1 HSPs)
scaffold0206 (13-79)||(10581-10649)


Alignment Details
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 54765832 - 54765902
Alignment:
Q  13 aatatcgtaaataaataaaatgtatgggagaagcgagca--gagtaaaatttcagaagtaactcaaatgca 81  Q
    |||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||    
T  54765832 aatatcgtaaataaataaaatgcatgggagaagcgagcattgagtaaaatttcagaagtaactcaaatgca 54765902  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 22440386 - 22440450
Alignment:
Q  101 aatacaaagaaaaggagttgcagcagccaagataagtaaaagtaacaaccaaatctctagaggaa 165  Q
    ||||||||||||||| || |||||| |||||||||||||||  ||||| |||||||| |||||||    
T  22440386 aatacaaagaaaaggggtagcagcacccaagataagtaaaaacaacaaacaaatctcaagaggaa 22440450  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 235
Target Start/End: Original strand, 22465652 - 22465703
Alignment:
Q  184 atttcttacaatcattcataggaaagatttcacatcatatattatacatcat 235  Q
    |||||||||||||||| | ||||||||| ||||| |||||||||||||||||    
T  22465652 atttcttacaatcatttaaaggaaagatctcacaacatatattatacatcat 22465703  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 22434406 - 22434460
Alignment:
Q  180 attaatttcttacaatcattcatagg-aaagatttcacatcatatattatacatc 233  Q
    |||||||||||||||||||||| ||| |||||| ||||| |||||||||||||||    
T  22434406 attaatttcttacaatcattcaaaggaaaagatctcacaacatatattatacatc 22434460  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 22633164 - 22633220
Alignment:
Q  180 attaatttcttacaatcatt-cataggaaagatttcacatcatatattatacatcat 235  Q
    |||||||||||||||||||| || |||||| || ||||| |||||||||||||||||    
T  22633164 attaatttcttacaatcatttcaaaggaaatatctcacaacatatattatacatcat 22633220  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 22448433 - 22448493
Alignment:
Q  175 aaaacattaatttcttacaatcattcataggaaagatttcacatcatatattatacatcat 235  Q
    |||| ||||||||||||||||||||||    || ||| ||||| |||||||||||||||||    
T  22448433 aaaatattaatttcttacaatcattcaacaaaaggatctcacaacatatattatacatcat 22448493  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 1078181 - 1078251
Alignment:
Q  13 aatatcgtaaataaataaaatgtatgggagaagcgagca--gagtaaaatttcagaagtaactcaaatgca 81  Q
    |||||||||||||||||||||| |||||||||||| |||  ||||||||||||||||||||||||||||||    
T  1078181 aatatcgtaaataaataaaatgcatgggagaagcgggcattgagtaaaatttcagaagtaactcaaatgca 1078251  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 27434027 - 27434097
Alignment:
Q  13 aatatcgtaaataaataaaatgtatgggagaagcgagca--gagtaaaatttcagaagtaactcaaatgca 81  Q
    ||||| |||||||||||||||| |||||||||| | |||  ||||||||||||| ||||||||||||||||    
T  27434027 aatattgtaaataaataaaatgcatgggagaagtgggcattgagtaaaatttcataagtaactcaaatgca 27434097  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 27433014 - 27433078
Alignment:
Q  17 tcgtaaataaataaaatgtatgggagaagcgagca--gagtaaaatttcagaagtaactcaaatg 79  Q
    ||||||||| ||||||||||||||||||| |||||   | |||||||||| || |||||||||||    
T  27433014 tcgtaaatatataaaatgtatgggagaagtgagcattaattaaaatttcaaaattaactcaaatg 27433078  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 54960969 - 54961039
Alignment:
Q  13 aatatcgtaaataaataaaatgtatgggagaagcgagca--gagtaaaatttcagaagtaactcaaatgca 81  Q
    |||||||||||||||||||||| | |||| || || |||  || |||||||||||||||||||||||||||    
T  54960969 aatatcgtaaataaataaaatgcacgggaaaaacgggcattgactaaaatttcagaagtaactcaaatgca 54961039  T

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Target: scaffold0206 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 10649 - 10581
Alignment:
Q  13 aatatcgtaaataaataaaatgtatgggagaagcgagca--gagtaaaatttcagaagtaactcaaatg 79  Q
    |||||||||||||||||||||| || | |||||||| ||  ||  ||||||||| ||||||||||||||    
T  10649 aatatcgtaaataaataaaatgcatagaagaagcgaacattgacaaaaatttcaaaagtaactcaaatg 10581  T

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