View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16427_high_20 (Length: 236)
Name: NF16427_high_20
Description: NF16427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16427_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 5466074 - 5465859
Alignment:
| Q |
1 |
caattatattagttttgattattttagaaaaatccgattaaaattaagtgtcaacaactattcaaatgcaatgaatggtagattcttgttaatattaata |
100 |
Q |
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| T |
5466074 |
caattatattagttttgtttattttagaaaaatccgattaaaattaagtgtcaacaactattcaaatgcaatgaatggtagattcttgttaatatta--- |
5465978 |
T |
|
| Q |
101 |
gaggtatttttgaaacaaagtgcttaataaaaatgaatagcgtaaaaagcaataataccctaaacagaaggacaatgcatgtactatgtttggtggtaaa |
200 |
Q |
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|||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||| |||||||||||||| |||| ||||||||||||||| |
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| T |
5465977 |
gaggtatttttgaaacaaagtgtttagtaaaaatgaatagcgtaaaaagcattaataccctaaagagaaggacaatgcacgtacaatgtttggtggtaaa |
5465878 |
T |
|
| Q |
201 |
gtgcataaaattcctcatc |
219 |
Q |
| |
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|||||||||| |||||||| |
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| T |
5465877 |
gtgcataaaagtcctcatc |
5465859 |
T |
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