View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16427_high_21 (Length: 236)

Name: NF16427_high_21
Description: NF16427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16427_high_21
NF16427_high_21
[»] chr8 (12 HSPs)
chr8 (1-221)||(5598251-5598471)
chr8 (1-221)||(5636804-5637024)
chr8 (1-221)||(14403321-14403541)
chr8 (1-221)||(6313542-6313762)
chr8 (1-221)||(5624613-5624827)
chr8 (1-221)||(5568751-5568968)
chr8 (8-221)||(32632741-32632942)
chr8 (64-187)||(5547632-5547755)
chr8 (116-221)||(13164448-13164553)
chr8 (22-185)||(5572899-5573054)
chr8 (2-56)||(13164598-13164652)
chr8 (78-162)||(5562471-5562555)
[»] scaffold0363 (1 HSPs)
scaffold0363 (1-221)||(15312-15532)


Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5598251 - 5598471
Alignment:
Q  1 accagacaaattagctgcttgaaaaagaacattcttccaattttgcatcatcttatcatcattgttgccttgctccctgtgttttgccagtgcagcgcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5598251 accagacaaattagctgcttgaaaaagaacattcttccaattttgtatcatcttatcatcattgttgccttgctccctgtgttttgccagtgcagcgccg 5598350  T
Q  101 taataccctgtttgtttccgcacgtgtgaagggtcaacatggtaaaaaaccggaataacaacaacgttgtcatcctcatttttgttaccacactccatta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5598351 taataccctgtttgtttccgcacgtgtgaagggtcaacatggtaaaaaacaggaatgacaacaacgttgtcatcctcatttttgttaccacactccatta 5598450  T
Q  201 tttgaacgagttcgttcaaac 221  Q
    |||||||||||||||||||||    
T  5598451 tttgaacgagttcgttcaaac 5598471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 5637024 - 5636804
Alignment:
Q  1 accagacaaattagctgcttgaaaaagaacattcttccaattttgcatcatcttatcatcattgttgccttgctccctgtgttttgccagtgcagcgcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5637024 accagacaaattagctgcttgaaaaagaacattcttccaattttgtatcatcttatcatcattgttgccttgctccctgtgttttgccagtgcagcgccg 5636925  T
Q  101 taataccctgtttgtttccgcacgtgtgaagggtcaacatggtaaaaaaccggaataacaacaacgttgtcatcctcatttttgttaccacactccatta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5636924 taataccctgtttgtttccgcacgtgtgaagggtcaacatggtaaaaaacaggaatgacaacaacgttgtcatcctcatttttgttaccacactccatta 5636825  T
Q  201 tttgaacgagttcgttcaaac 221  Q
    |||||||||||||||||||||    
T  5636824 tttgaacgagttcgttcaaac 5636804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 14403541 - 14403321
Alignment:
Q  1 accagacaaattagctgcttgaaaaagaacattcttccaattttgcatcatcttatcatcattgttgccttgctccctgtgttttgccagtgcagcgcca 100  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| | |||||| |||  |||| |||     
T  14403541 accagacaaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcaccattgttgtcttgctccatatgtttttccaacgcagtgccg 14403442  T
Q  101 taataccctgtttgtttccgcacgtgtgaagggtcaacatggtaaaaaaccggaataacaacaacgttgtcatcctcatttttgttaccacactccatta 200  Q
    |||  ||| || || ||||||||||||||||||||||||||||| || || |||| |||||||||||||||||| ||||||||||||| |||||||||||    
T  14403441 taactcccagtctgcttccgcacgtgtgaagggtcaacatggtagaacacaggaacaacaacaacgttgtcatcttcatttttgttactacactccatta 14403342  T
Q  201 tttgaacgagttcgttcaaac 221  Q
    ||| ||| |||||||||||||    
T  14403341 tttcaaccagttcgttcaaac 14403321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 6313542 - 6313762
Alignment:
Q  1 accagacaaattagctgcttgaaaaagaacattcttccaattttgcatcatcttatcatcattgttgccttgctccctgtgttttgccagtgcagcgcca 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| | | |||||||   ||  |||| ||||    
T  6313542 accagacaaattagctgcttgaaaaagagcattcttccaattttgcatcatcttatcatcatttttgccttgtttcttgtgtttaatcaacgcagtgcca 6313641  T
Q  101 taataccctgtttgtttccgcacgtgtgaagggtcaacatggtaaaaaaccggaataacaacaacgttgtcatcctcatttttgttaccacactccatta 200  Q
    |||   || || || ||||||||||||||||||||||||||||| || || |||||||||||||| |||||||| ||||||||||||| |||||||||||    
T  6313642 taactaccagtctgcttccgcacgtgtgaagggtcaacatggtagaacactggaataacaacaaccttgtcatcttcatttttgttacaacactccatta 6313741  T
Q  201 tttgaacgagttcgttcaaac 221  Q
    ||| ||| |||||||||||||    
T  6313742 tttcaacaagttcgttcaaac 6313762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 5624827 - 5624613
Alignment:
Q  1 accagacaaattagctgcttgaaaaagaacattcttccaattttgcatcatcttatcatcattgttgccttgctccctgtgttttgccagtgcagcgcca 100  Q
    ||||||||||||||| |||||||||||| || | ||||| |||||||||      ||||  | ||||||||||||| ||||||| ||||| |||| ||||    
T  5624827 accagacaaattagcagcttgaaaaagagcagtattccatttttgcatc------tcatggtcgttgccttgctccttgtgtttagccagagcagtgcca 5624734  T
Q  101 taataccctgtttgtttccgcacgtgtgaagggtcaacatggtaaaaaaccggaataacaacaacgttgtcatcctcatttttgttaccacactccatta 200  Q
    |||   || || ||||||||||| |||||||||||||||||||| || || |||||||||||||| |||||||| ||||||||||||  |||||||||||    
T  5624733 taacttccggtctgtttccgcacttgtgaagggtcaacatggtagaacacaggaataacaacaacattgtcatcttcatttttgttattacactccatta 5624634  T
Q  201 tttgaacgagttcgttcaaac 221  Q
    |||||||||||||||||||||    
T  5624633 tttgaacgagttcgttcaaac 5624613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 5568968 - 5568751
Alignment:
Q  1 accagacaaattagctgcttgaaaaagaacattcttccaattttgcatcatcttatcatcattgttgccttgctccctgtgttttgccagtgcagcgcca 100  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| | |||  ||||||   ||||||| |||| ||||  ||||    
T  5568968 accagacaaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcatcttggttctcttgct---tgtgtttcgccaatgcactgcca 5568872  T
Q  101 taataccctgtttgtttccgcacgtgtgaagggtcaacatggtaaaaaaccggaataacaacaacgttgtcatcctcatttttgttaccacactccatta 200  Q
    |||  ||| || || |||||||| |||||||||||||||||||| || || ||||| ||| ||| |||||| || |||||||||||||  ||||||||||    
T  5568871 taactcccggtctgcttccgcacatgtgaagggtcaacatggtagaacacaggaatcacaccaatgttgtcgtcttcatttttgttacggcactccatta 5568772  T
Q  201 tttgaacgagttcgttcaaac 221  Q
     || ||| ||||| |||||||    
T  5568771 gttcaacaagttcattcaaac 5568751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 32632942 - 32632741
Alignment:
Q  8 aaattagctgcttgaaaaagaacattcttccaattttgcatcatcttatcatcattgttgccttgctccctgtgttttgccagtgcagcgccataatacc 107  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||     |||||||| | ||||||||||||  |||| ||| |||   |    
T  32632942 aaattggctgcttgaaaaagagcattcttccaattttgcatcatcttatgatca---cagccttgcttcttgtgttttgccaacgcagtgccgtaacttc 32632846  T
Q  108 ctgtttgtttccgcacgtgtgaagggtcaacatggtaaaaaaccggaataacaacaacgttgtcatcctcatttttgttaccacactccattatttgaac 207  Q
    | || |||||||||||| | || ||||||| ||||||||| || ||||||||| ||||||||||         |||||||| |||||||||||||| |||    
T  32632845 cagtctgtttccgcacgcgggaggggtcaatatggtaaaacacaggaataacagcaacgttgtc---------tttgttactacactccattatttcaac 32632755  T
Q  208 gagttcgttcaaac 221  Q
    ||||||||||||||    
T  32632754 gagttcgttcaaac 32632741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 64 - 187
Target Start/End: Complemental strand, 5547755 - 5547632
Alignment:
Q  64 gttgccttgctccctgtgttttgccagtgcagcgccataataccctgtttgtttccgcacgtgtgaagggtcaacatggtaaaaaaccggaataacaaca 163  Q
    ||||||||||| | ||||||| ||||  |||| |||||||  ||| ||||| |||| |||||||||||||||||||||||| || || ||||||||||||    
T  5547755 gttgccttgcttcttgtgtttagccaaggcagtgccataactcccagtttgcttcctcacgtgtgaagggtcaacatggtagaacacaggaataacaaca 5547656  T
Q  164 acgttgtcatcctcatttttgtta 187  Q
    ||||||||||| ||||||||||||    
T  5547655 acgttgtcatcttcatttttgtta 5547632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 116 - 221
Target Start/End: Complemental strand, 13164553 - 13164448
Alignment:
Q  116 ttccgcacgtgtgaagggtcaacatggtaaaaaaccggaataacaacaacgttgtcatcctcatttttgttaccacactccattatttgaacgagttcgt 215  Q
    ||||| || |||||||||||||||||||| || || ||||||||||||||||| ||||  ||||| ||||| | |||||||||||||||||| |||||||    
T  13164553 ttccgaacatgtgaagggtcaacatggtagaacacaggaataacaacaacgttatcattttcattgttgttgctacactccattatttgaactagttcgt 13164454  T
Q  216 tcaaac 221  Q
    ||||||    
T  13164453 tcaaac 13164448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 185
Target Start/End: Complemental strand, 5573054 - 5572899
Alignment:
Q  22 aaaaagaacattcttccaattttgcatcatcttatcatcattgttgccttgctccctgtgttttgccagtgcagcgccataataccctgtttgtttccgc 121  Q
    ||||||| | ||||||||| |||| |||||| |||||||||||   ||||||| | ||||||||||||  |||| ||| |||  ||| || || |||||     
T  5573054 aaaaagagctttcttccaaatttgtatcatcatatcatcattg---ccttgcttcttgtgttttgccaaagcagtgccgtaactccccgtctgcttccgg 5572958  T
Q  122 acgtgtgaagggtcaacatggtaaaaaaccggaataacaacaacgttgtcatcctcatttttgt 185  Q
    ||||||||||||||||||||||     || |||||||||||||| ||||| |  ||||||||||    
T  5572957 acgtgtgaagggtcaacatggt-----acgggaataacaacaacattgtctttttcatttttgt 5572899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 13164652 - 13164598
Alignment:
Q  2 ccagacaaattagctgcttgaaaaagaacattcttccaattttgcatcatcttat 56  Q
    ||||| ||||||| |||||  |||||| |||||||||||||||||| ||||||||    
T  13164652 ccagataaattagatgcttcgaaaagagcattcttccaattttgcaacatcttat 13164598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 5562555 - 5562471
Alignment:
Q  78 tgtgttttgccagtgcagcgccataataccctgtttgtttccgcacgtgtgaagggtcaacatggtaaaaaaccggaataacaac 162  Q
    ||||||||||||| |||| ||| |||  |||||| |||||||| || |  ||||||||||||||||| || || ||| |||||||    
T  5562555 tgtgttttgccagcgcagtgccgtaactccctgtgtgtttccgaacatcagaagggtcaacatggtagaacacaggattaacaac 5562471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 15312 - 15532
Alignment:
Q  1 accagacaaattagctgcttgaaaaagaacattcttccaattttgcatcatcttatcatcattgttgccttgctccctgtgttttgccagtgcagcgcca 100  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| | |||||| |||  |||| |||     
T  15312 accagacaaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcaccattgttgtcttgctccatatgtttttccaacgcagtgccg 15411  T
Q  101 taataccctgtttgtttccgcacgtgtgaagggtcaacatggtaaaaaaccggaataacaacaacgttgtcatcctcatttttgttaccacactccatta 200  Q
    |||  ||| || || ||||||||||||||||||||||||||||| || || |||| |||||||||||||||||| ||||||||||||| |||||||||||    
T  15412 taactcccagtctgcttccgcacgtgtgaagggtcaacatggtagaacacaggaacaacaacaacgttgtcatcttcatttttgttactacactccatta 15511  T
Q  201 tttgaacgagttcgttcaaac 221  Q
    ||| ||| |||||||||||||    
T  15512 tttcaaccagttcgttcaaac 15532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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