View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16427_high_4 (Length: 503)
Name: NF16427_high_4
Description: NF16427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16427_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 468; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 16 - 487
Target Start/End: Original strand, 47252887 - 47253358
Alignment:
| Q |
16 |
atgagtaattaagtaaccatatgcacagagatccaggttcaagtatctaagccaccaaacatattttgcctaaggctaactaagttgattgccaaacacc |
115 |
Q |
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| T |
47252887 |
atgagtaattaagtaaccatatgcacagagatccaggttcaagtatctaagccaccaaacatattttgcctaaggctaactaagttgattgccaaacacc |
47252986 |
T |
|
| Q |
116 |
acttaacccctaagacagtatttctgatttagattgtcactcttctacaaagtaatgatttggtatttctggagatgaaggaaggtttgccacattcttg |
215 |
Q |
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| T |
47252987 |
acttaacccctaagacagtatttctgattcagattgtcactcttctacaaagtaatgatttggtatttctggagatgaaggaaggtttgccacattcttg |
47253086 |
T |
|
| Q |
216 |
aactgtttcaaacaaacacttcaagtcaatcaacttgcaataataagaaccagctatatattaactataacaaagaaaggctaaaacaatcaccttgtgt |
315 |
Q |
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| T |
47253087 |
aactgtttcaaacaaacacttcaagtcaatcaacttgcaataataagaaccagctatatattaactataacaaagaaaggctaaaacaatcaccttgtgt |
47253186 |
T |
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| Q |
316 |
tgcttgtatttctccctaacagctttcaatgatgcagcccttcttaccaaatacaaatcatgcaaaatcagaacacattcctccaactcagcagatttgt |
415 |
Q |
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| T |
47253187 |
tgcttgtatttctccctaacagctttcaatgatgcagcccttcttaccaaatacaaatcatgcaaaatcagaacacattcctccaactcagcagatttgt |
47253286 |
T |
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| Q |
416 |
aaaacaagcattcactcaaagatgaggtctgcaatagattctcaacattaaatgcattgaaatacagaaatt |
487 |
Q |
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| T |
47253287 |
aaaacaagcattcactcaaagatgaggtctgcaatagattctcaacattaaatgcattgaaatacagaaatt |
47253358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 156 - 479
Target Start/End: Original strand, 47241780 - 47242100
Alignment:
| Q |
156 |
tcttctacaaagtaatgatttggtatttctggagatgaaggaaggtttgccacattcttgaactgtttcaaacaaacacttcaagtcaatcaacttgcaa |
255 |
Q |
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|||||| ||||||||| ||||||||| ||||| || ||| ||||||||||||| |||||||||| || |||| | |||||||||| ||||||||| |
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| T |
47241780 |
tcttcttcaaagtaataatttggtatctctggcgagctagggaggtttgccacatatttgaactgttccagacaatgagttcaagtcaaccaacttgcat |
47241879 |
T |
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| Q |
256 |
taataagaaccagctatatattaactataacaaag--------aaaggctaaaacaatcaccttgtgttgcttgtatttctccctaacagctttcaatga |
347 |
Q |
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| T |
47241880 |
taataagaa-----------ttaactataacaaatgaaatgttaaaagttaaaacaatcaccttttgttgcttgtatttctccctaacagctttgaagga |
47241968 |
T |
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| Q |
348 |
tgcagcccttcttaccaaatacaaatcatgcaaaatcagaacacattcctccaactcagcagatttgtaaaacaagcattcactcaaagatgaggtctgc |
447 |
Q |
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||| ||||||||| ||||||||| ||||| ||||||| ||||||||| ||||| ||||| || |||||| || ||||||| | ||||| ||||| |
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| T |
47241969 |
tgctgcccttcttgacaaatacaagtcatgtaaaatcataacacattcttccaattcagccgacttgtaacccagacattcacatagggatgaagtctga |
47242068 |
T |
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| Q |
448 |
aatagattctcaacattaaatgcattgaaata |
479 |
Q |
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| T |
47242069 |
aatagattcgcaacattaagtaccttgaaata |
47242100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 154 - 465
Target Start/End: Original strand, 47248227 - 47248535
Alignment:
| Q |
154 |
actcttctacaaagtaatgatttggtatttctggagatgaaggaaggtttgccacattcttgaactgtttcaaacaaacacttcaagtcaatcaacttgc |
253 |
Q |
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|||||| | ||||||||||||||||||| ||||| |||||||| |||||||||||| || ||||||| || | || | ||||||||||| ||||||| |
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| T |
47248227 |
actctttttcaaagtaatgatttggtatctctggcgatgaaggcaggtttgccacacattttaactgttccagaaaacgatttcaagtcaatgaacttgc |
47248326 |
T |
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| Q |
254 |
aataataagaaccagctatatattaactataacaaagaaaggctaaaacaatcaccttgtgttgcttgtatttctccctaacagctttcaatgatgcagc |
353 |
Q |
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| T |
47248327 |
aataataagaaataactata-acaaa--agaattgtcaaaagttaaaacaatcaccttgttctgcttgtatttgtcacgaacagctttgaaggatcctgc |
47248423 |
T |
|
| Q |
354 |
ccttcttaccaaatacaaatcatgcaaaatcagaacacattcctccaactcagcagatttgtaaaacaagcattcactcaaagatgaggtctgcaataga |
453 |
Q |
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| T |
47248424 |
ctttcttgacatatacaaatcatgtaaaatgataacacaatcttctaaattagccgatgtgtaacccaagcattcacacagggaaggagtctgcaataga |
47248523 |
T |
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| Q |
454 |
ttctcaacatta |
465 |
Q |
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|||| ||||||| |
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| T |
47248524 |
ttctgaacatta |
47248535 |
T |
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