View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16427_low_10 (Length: 396)
Name: NF16427_low_10
Description: NF16427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16427_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 11224999 - 11224626
Alignment:
| Q |
18 |
attttgattttgtaatcagttcacagaatatttcaacaatgtgtaactcgtatactacatgcacaacatttaatcaacttaacacacccaaaaatatact |
117 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11224999 |
attttgattttgtaatcagttcgcagaatatttcaacaatgtgtaactcttatactacatgcacaacatttaatcaacttaacacacccaaaagtatact |
11224900 |
T |
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| Q |
118 |
taaagctatagcttttccttcttcgttcacataatttccatcattctttattaaagttgacaaaataacctcgcttcgacatacaggccttcctaattgt |
217 |
Q |
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| T |
11224899 |
tacaactattgcttttccttcttcgttcacataatttccatcattctttattaaagttgacaaaataacctcgcttcgacatacaggccttcctaattgt |
11224800 |
T |
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| Q |
218 |
tgttcctaacatcataaataaaatgtaaattaagaactcatcaataacagctttgttgggatacataaatattttgaatctgcttaccattagacgaccc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11224799 |
tgttcctaacatcataaataaaatgtaaattaagaactcatcaataacagctttgttgggatacataaatattttgaatctgcttaccattagacgaccc |
11224700 |
T |
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| Q |
318 |
cttcttgcgttgctcctactaccaccaacatgtgggactttaagcttcttacgattttcggtattcttctcact |
391 |
Q |
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| T |
11224699 |
cttcttgcgttgctcctactaccaccagcatgtgggactttaagcttcttacgattttcggtattcttctcact |
11224626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 11225542 - 11225433
Alignment:
| Q |
18 |
attttgattttgtaatcagttcacagaatatt-tcaacaatgtgtaactcgtatactacatgcacaacatttaatcaacttaacacacccaaaaatatac |
116 |
Q |
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| T |
11225542 |
attttgattttacaatcagttctcagaattttgtcaagaatgcgtaacacttgtactacatgcacaacatttaatcaac-caacacacccaaaagtatac |
11225444 |
T |
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| Q |
117 |
ttaaagctata |
127 |
Q |
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||| ||||||| |
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| T |
11225443 |
ttacagctata |
11225433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 11225351 - 11225243
Alignment:
| Q |
18 |
attttgattttgtaatcagttcacagaatatt-tcaacaatgtgtaactcgtatactacatgcacaacatttaatcaacttaacacacccaaaaatatac |
116 |
Q |
| |
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||||||||||| |||||||| |||||| || ||||||||||| ||| | |||| |||||||| ||||||||||||| | ||||||||||||| |||| |
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| T |
11225351 |
attttgattttacaatcagtttccagaattttatcaacaatgtgcaacacttatagtacatgcataacatttaatcaa-tcaacacacccaaaagtatat |
11225253 |
T |
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| Q |
117 |
ttaaagctat |
126 |
Q |
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||| |||||| |
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| T |
11225252 |
ttacagctat |
11225243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 11225171 - 11225111
Alignment:
| Q |
35 |
agttcacagaatatttcaacaatgtgtaactcgtatactacatgcacaacatttaatcaac |
95 |
Q |
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||||| |||||| | ||||||||||||||||| ||||||||||| ||||||| |||||||| |
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| T |
11225171 |
agttcgcagaatttatcaacaatgtgtaactcttatactacatgaacaacatataatcaac |
11225111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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