View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16427_low_13 (Length: 359)

Name: NF16427_low_13
Description: NF16427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16427_low_13
NF16427_low_13
[»] chr8 (6 HSPs)
chr8 (18-249)||(9122482-9122722)
chr8 (21-125)||(16947349-16947453)
chr8 (18-142)||(18340415-18340539)
chr8 (23-142)||(3608457-3608576)
chr8 (307-359)||(9123235-9123287)
chr8 (42-76)||(44136849-44136883)
[»] chr4 (9 HSPs)
chr4 (18-142)||(468622-468746)
chr4 (41-137)||(153298-153394)
chr4 (18-137)||(10122232-10122345)
chr4 (18-124)||(11870895-11871000)
chr4 (52-137)||(21241456-21241544)
chr4 (26-115)||(15133635-15133724)
chr4 (18-126)||(16702806-16702909)
chr4 (22-86)||(16703336-16703400)
chr4 (60-137)||(42098386-42098463)
[»] chr2 (5 HSPs)
chr2 (18-142)||(26294576-26294701)
chr2 (18-137)||(15731591-15731709)
chr2 (18-137)||(26178723-26178840)
chr2 (18-110)||(34546643-34546734)
chr2 (44-116)||(34809258-34809330)
[»] chr5 (4 HSPs)
chr5 (19-142)||(18600295-18600418)
chr5 (18-142)||(32274341-32274464)
chr5 (22-94)||(41048129-41048201)
chr5 (40-122)||(23154732-23154814)
[»] chr6 (2 HSPs)
chr6 (18-123)||(33630705-33630810)
chr6 (103-135)||(21885294-21885326)
[»] chr3 (1 HSPs)
chr3 (41-142)||(55071301-55071400)
[»] chr7 (4 HSPs)
chr7 (18-142)||(9364234-9364357)
chr7 (58-142)||(43392990-43393074)
chr7 (42-142)||(7415003-7415102)
chr7 (18-117)||(9380473-9380575)
[»] chr1 (1 HSPs)
chr1 (21-69)||(7213015-7213063)


Alignment Details
Target: chr8 (Bit Score: 173; Significance: 6e-93; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 9122482 - 9122722
Alignment:
Q  18 aagaaaaatttaaagataaatataaaaaatgatatgactaaattatttttcttttaattctctccatttatatatgtgtgtccagatattttttatttgg 117  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||    
T  9122482 aagaaaaatttaaaaataaatataaaaaatgatatgattaaattatttttcttttaattctctccatttatatatgtgtgttcatatattttttatctgg 9122581  T
Q  118 gtttgtgactagataagaatcgctcatgtttataatcaaccaaatatttttgttgcactgcaacacagtttctttagtgactaatatga---------ta 208  Q
     |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||         ||    
T  9122582 atttgtgactagataagaatctctcatgtttgtaatcaaccaaatatttttgttgcactgcaacacattttctttagtgactaatatgatagtcttatta 9122681  T
Q  209 gtctaggtgaaaaaattgatagtgcagttgattatattata 249  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9122682 gtctaggtgaaaaaattgatagtgcagttgattatattata 9122722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 16947349 - 16947453
Alignment:
Q  21 aaaaatttaaagataaatataaaaaatgatatgactaaattatttttcttttaattctctccatttatatatgtgtgtccagatattttttatttgggtt 120  Q
    |||||||||||||||||  ||||||||||| ||| ||| |||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||| |    
T  16947349 aaaaatttaaagataaaagtaaaaaatgatgtgattaatttatctttcttttaattctctccatttatgtatgtgtgtccaaatattttttatttggggt 16947448  T
Q  121 tgtga 125  Q
    |||||    
T  16947449 tgtga 16947453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 18340539 - 18340415
Alignment:
Q  18 aagaaaaatttaaagataaatataaaaaatgatatgactaaattatttttcttttaattctctccatttatatatgtgtgtccagatattttttatttgg 117  Q
    ||||||||||||||||||||   |||| ||||| ||| ||| ||||||||||||||||||||||||||||| ||||||||| || |||||||| |||| |    
T  18340539 aagaaaaatttaaagataaagtaaaaatatgatgtgattaatttatttttcttttaattctctccatttatgtatgtgtgttcaaatatttttaatttag 18340440  T
Q  118 gtttgtgactagataagaatcgctc 142  Q
    |||||||||||| ||||||| ||||    
T  18340439 gtttgtgactaggtaagaattgctc 18340415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 142
Target Start/End: Complemental strand, 3608576 - 3608457
Alignment:
Q  23 aaatttaaagataaatataaaaaatgatatgactaaattatttttcttttaattctctccatttatatatgtgtgtccagatattttttatttgggtttg 122  Q
    ||||||||||||||| ||||||||| || ||||||| ||||||||||||||||| ||||  ||||| |||||||||||| ||||||||||| ||||||||    
T  3608576 aaatttaaagataaaaataaaaaataatgtgactaatttatttttcttttaattatctcattttatgtatgtgtgtccaaatattttttatctgggtttg 3608477  T
Q  123 tgactagataagaatcgctc 142  Q
    || |||| ||||||| ||||    
T  3608476 tgtctaggtaagaattgctc 3608457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 307 - 359
Target Start/End: Original strand, 9123235 - 9123287
Alignment:
Q  307 ataagacaaatttgaactcaatctatttatcattcaattcatatgttcttctc 359  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9123235 ataagacaaatttgaacttaatctatttatcattcaattcatatgttcttctc 9123287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 44136883 - 44136849
Alignment:
Q  42 aaaaatgatatgactaaattatttttcttttaatt 76  Q
    |||||||||||||||||||||||||||||| ||||    
T  44136883 aaaaatgatatgactaaattatttttctttcaatt 44136849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 7e-31; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 468622 - 468746
Alignment:
Q  18 aagaaaaatttaaagataaatataaaaaatgatatgactaaattatttttcttttaattctctccatttatatatgtgtgtccagatattttttatttgg 117  Q
    ||||||||||||||||||||  |||| |||||| ||||||| |||||||||||||||||||||| |||||| ||||| || ||| |||||||| ||||||    
T  468622 aagaaaaatttaaagataaaagtaaataatgatgtgactaatttatttttcttttaattctctctatttatgtatgtatgcccaaatatttttgatttgg 468721  T
Q  118 gtttgtgactagataagaatcgctc 142  Q
    | |||||||||| ||||||| ||||    
T  468722 gattgtgactaggtaagaattgctc 468746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 41 - 137
Target Start/End: Original strand, 153298 - 153394
Alignment:
Q  41 aaaaaatgatatgactaaattatttttcttttaattctctccatttatatatgtgtgtccagatattttttatttgggtttgtgactagataagaat 137  Q
    |||||||||| ||||||| ||||||||||||||||||| ||||||||| |||||||| ||| |||||||| ||||||| |||||||||| |||||||    
T  153298 aaaaaatgatgtgactaatttatttttcttttaattctatccatttatctatgtgtgcccaaatatttttgatttggggttgtgactaggtaagaat 153394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 10122232 - 10122345
Alignment:
Q  18 aagaaaaatttaaagataaatataaaaaatgatatgactaaattatttttcttttaattctctccatttatatatgtgtgtccagatattttttatttgg 117  Q
    |||||||||||||| |||||  || |||||||||||||||| |||||||||||||| |||||||||||||      |||||| | |||||||| |||| |    
T  10122232 aagaaaaatttaaaaataaaagtacaaaatgatatgactaatttatttttcttttatttctctccattta------tgtgtctaaatatttttgatttag 10122325  T
Q  118 gtttgtgactagataagaat 137  Q
    | |||||||||| |||||||    
T  10122326 ggttgtgactaggtaagaat 10122345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 11871000 - 11870895
Alignment:
Q  18 aagaaaaatttaaagataaatataaaaaatgatatgactaaattatttttcttttaattctctccatttatatatgtgtgtccagatattttttatttgg 117  Q
    ||||||||| ||||||||||  ||||||  ||| ||| ||| ||||||||||||||||| | | ||||||| |||||||||  | |||||||||||||||    
T  11871000 aagaaaaatctaaagataaaggtaaaaatggatgtgattaatttatttttcttttaatt-ttttcatttatgtatgtgtgtttaaatattttttatttgg 11870902  T
Q  118 gtttgtg 124  Q
     ||||||    
T  11870901 atttgtg 11870895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 21241456 - 21241544
Alignment:
Q  52 tgactaaattatttttcttttaattctctccat---ttatatatgtgtgtccagatattttttatttgggtttgtgactagataagaat 137  Q
    ||||||| |||||||||||||||||||||| ||   |||||||| |||||| | |||||||| |||| ||||||||||||  |||||||    
T  21241456 tgactaatttatttttcttttaattctctctatttattatatatatgtgtctaaatatttttgatttaggtttgtgactaagtaagaat 21241544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 15133724 - 15133635
Alignment:
Q  26 tttaaagataaatataaaaaatgatatgactaaattatttttcttttaattctctccatttatatatgtgtgtccagatattttttattt 115  Q
    ||||||||||||  ||||||||||| ||| ||| ||||||||||||||||| ||| |||||||  |||||||  || |||||||| ||||    
T  15133724 tttaaagataaaagtaaaaaatgatgtgattaatttatttttcttttaattatcttcatttatgcatgtgtgctcaaatatttttgattt 15133635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 16702909 - 16702806
Alignment:
Q  18 aagaaaaatttaaagataaatataaaaaatgatatgactaaattatttttcttttaattctctccatttatatatgtgtgtccagatattttttatttgg 117  Q
    ||||||||||||||||||||  |||||||| || ||||||     ||||| ||||||||||||| |||||| ||||| | |||| |||||||| ||||||    
T  16702909 aagaaaaatttaaagataaaagtaaaaaatcatgtgacta-----ttttttttttaattctctctatttatgtatgtatctccaaatatttttgatttgg 16702815  T
Q  118 gtttgtgac 126  Q
     | ||||||    
T  16702814 atatgtgac 16702806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 16703400 - 16703336
Alignment:
Q  22 aaaatttaaagataaatataaaaaatgatatgactaaattatttttcttttaattctctccattt 86  Q
    ||||| ||||||||||  ||||||||||| ||||||| ||| |||||||||||||||||| ||||    
T  16703400 aaaatgtaaagataaaagtaaaaaatgatgtgactaatttaattttcttttaattctctctattt 16703336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 42098463 - 42098386
Alignment:
Q  60 ttatttttcttttaattctctccatttatatatgtgtgtccagatattttttatttgggtttgtgactagataagaat 137  Q
    ||||||||||||||||| ||| ||||||| |||| |||| || ||| |||| |||||  ||||||||||| |||||||    
T  42098463 ttatttttcttttaattatctgcatttatgtatgcgtgttcaaatacttttgatttgaatttgtgactaggtaagaat 42098386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 26294701 - 26294576
Alignment:
Q  18 aagaaaaatttaaagataaatataaaaaatgatatgactaaattatttttcttttaattctctccatttatatatgtgtgtccagata-ttttttatttg 116  Q
    ||||||||||||||||||||  ||||||||||| || |||| ||||||||||||||||||||||  ||||| |||||||||||| ||| |||||||||||    
T  26294701 aagaaaaatttaaagataaaagtaaaaaatgatgtgtctaatttatttttcttttaattctctcattttatgtatgtgtgtccaaatatttttttatttg 26294602  T
Q  117 ggtttgtgactagataagaatcgctc 142  Q
    ||||| || |||| ||||||| ||||    
T  26294601 ggtttctgtctaggtaagaattgctc 26294576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 15731591 - 15731709
Alignment:
Q  18 aagaaaaatttaaagataaatataaaaaatgatatgactaaattatttttcttttaattctctccatttatatatgtgtgtccagatattttttatttgg 117  Q
    |||||||| |||||||||||  ||||||||||  ||||||| ||||||||||||||||||| | ||||||| |||||||||| | |||||||| ||||||    
T  15731591 aagaaaaacttaaagataaaagtaaaaaatgacgtgactaatttatttttcttttaattct-ttcatttatgtatgtgtgtcaaaatatttttgatttgg 15731689  T
Q  118 gtttgtgactagataagaat 137  Q
    |||||| ||||  |||||||    
T  15731690 gtttgtaactaagtaagaat 15731709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 26178723 - 26178840
Alignment:
Q  18 aagaaaaatttaaagataaatataaaaaatgatatgactaaattatttttcttttaattctctccatttatatatgtgtgtccagatattttttatttgg 117  Q
    |||||||| ||||||||||   ||||||||||| ||| ||  |||||||||||||||||||||| |||||| |||||  |  || |||||||||||||||    
T  26178723 aagaaaaaattaaagataacagtaaaaaatgatgtgattattttatttttcttttaattctctcgatttatgtatgtccg--caaatattttttatttgg 26178820  T
Q  118 gtttgtgactagataagaat 137  Q
    |||| || |||| |||||||    
T  26178821 gtttatgtctaggtaagaat 26178840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 34546643 - 34546734
Alignment:
Q  18 aagaaaaatttaaagataaatataaaaaatgatatgactaaattatttttcttttaattctctccatttatatatgtgtgtccagatattttt 110  Q
    ||||||||||||||||||||  |||||| |||| ||| ||| |||||||||||| |||||||||||||||| | | |||||||| ||||||||    
T  34546643 aagaaaaatttaaagataaaagtaaaaa-tgatgtgattaatttatttttctttcaattctctccatttatgtttatgtgtccaaatattttt 34546734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 34809258 - 34809330
Alignment:
Q  44 aaatgatatgactaaattatttttcttttaattctctccatttatatatgtgtgtccagatattttttatttg 116  Q
    |||||||||||||||||| |||||| |||| || || | ||||||||| ||||| ||| |  |||||||||||    
T  34809258 aaatgatatgactaaattctttttcatttatttttcgctatttatataagtgtgcccaaaccttttttatttg 34809330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 18600418 - 18600295
Alignment:
Q  19 agaaaaatttaaagataaatataaaaaatgatatgactaaattatttttcttttaattctctccatttatatatgtgtgtccagatattttttatttggg 118  Q
    ||||||||||||||| |||  |||||||| || ||||||| ||| ||||||||||||||||||||||||| |||||||  ||| |||||||| |||||||    
T  18600418 agaaaaatttaaagacaaaagtaaaaaattatgtgactaatttagttttcttttaattctctccatttatgtatgtgtacccaaatatttttgatttggg 18600319  T
Q  119 tttgtgactagataagaatcgctc 142  Q
    ||||||||||  ||||||| ||||    
T  18600318 tttgtgactaagtaagaattgctc 18600295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 32274341 - 32274464
Alignment:
Q  18 aagaaaaatttaaagataaatataaaaaatgatatgactaaattatttttcttttaattctctccatttatatatgtgtgtccagatattttttatttgg 117  Q
    |||||||||||||| ||||| |||||||||||| ||||||| |||||||||| |||||||| || |||||| |||||||||||| |||||||| |||||     
T  32274341 aagaaaaatttaaaaataaa-ataaaaaatgatgtgactaatttatttttctcttaattctttcaatttatgtatgtgtgtccaaatatttttgatttgc 32274439  T
Q  118 gtttgtgactagataagaatcgctc 142  Q
    | ||||||||||  |||||| ||||    
T  32274440 gattgtgactaggaaagaattgctc 32274464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 41048129 - 41048201
Alignment:
Q  22 aaaatttaaagataaatataaaaaatgatatgactaaattatttttcttttaattctctccatttatatatgt 94  Q
    ||||||||||||||||  ||||||||||| ||||||| ||||||||||||||||||| | ||||||| |||||    
T  41048129 aaaatttaaagataaaagtaaaaaatgatgtgactaatttatttttcttttaattctatacatttatgtatgt 41048201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 23154732 - 23154814
Alignment:
Q  40 taaaaaatgatatgactaaattatttttcttttaattctctccatttatatatgtgtgtccagatattttttatttgggtttg 122  Q
    |||||||| || ||||||| ||| ||||||||||||||||||||||||| ||||| ||| || |||| ||| ||||| |||||    
T  23154732 taaaaaataatgtgactaatttacttttcttttaattctctccatttatctatgtatgttcaaatatgtttgatttgagtttg 23154814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 33630810 - 33630705
Alignment:
Q  18 aagaaaaatttaaagataaatataaaaaatgatatgactaaattatttttcttttaattctctccatttatatatgtgtgtccagatattttttatttgg 117  Q
    |||||||| |||||||||||  |||||||| || ||||||| ||||||||||||||||||||||||||||| |||||||  ||  ||||||||||||| |    
T  33630810 aagaaaaacttaaagataaaagtaaaaaattatgtgactaatttatttttcttttaattctctccatttatgtatgtgtagcctaatattttttatttag 33630711  T
Q  118 gtttgt 123  Q
    ||||||    
T  33630710 gtttgt 33630705  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 135
Target Start/End: Original strand, 21885294 - 21885326
Alignment:
Q  103 atattttttatttgggtttgtgactagataaga 135  Q
    |||||||||||||||||||||||||| ||||||    
T  21885294 atattttttatttgggtttgtgactatataaga 21885326  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 41 - 142
Target Start/End: Complemental strand, 55071400 - 55071301
Alignment:
Q  41 aaaaaatgatatgactaaattatttttcttttaattctctccatttatatatgtgtgtccagatattttttatttgggtttgtgactagataagaatcgc 140  Q
    |||||||||||||| ||| || ||||| |||||||||||||||||||| | |||||| ||| ||||||||||||||||||||||  ||| ||||||| ||    
T  55071400 aaaaaatgatatgattaattttttttt-ttttaattctctccatttatgt-tgtgtgcccaaatattttttatttgggtttgtgtttagctaagaattgc 55071303  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 9364234 - 9364357
Alignment:
Q  18 aagaaaaatttaaagataaatataaaaaatgatatgactaaattatttttcttttaattctctccatttatatatgtgtgtccagatattttttatttgg 117  Q
    ||||||||||||||||||||  ||||||||||| ||||||| || ||||| || ||||  | | ||||||| |||||||||||| |||||||| ||||||    
T  9364234 aagaaaaatttaaagataaaagtaaaaaatgatgtgactaactt-ttttttttataatatttttcatttatgtatgtgtgtccaaatatttttgatttgg 9364332  T
Q  118 gtttgtgactagataagaatcgctc 142  Q
      || ||||||  ||||||| ||||    
T  9364333 agttctgactaagtaagaattgctc 9364357  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 43392990 - 43393074
Alignment:
Q  58 aattatttttcttttaattctctccatttatatatgtgtgtccagatattttttatttgggtttgtgactagataagaatcgctc 142  Q
    |||| ||||| |||||||||||| ||||| | |||||||| ||| ||||||||||||||||||| || |||| ||||||| ||||    
T  43392990 aatttttttttttttaattctcttcatttgtgtatgtgtgcccaaatattttttatttgggtttatgtctaggtaagaattgctc 43393074  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 42 - 142
Target Start/End: Original strand, 7415003 - 7415102
Alignment:
Q  42 aaaaatgatatgactaaattatttttcttttaattctctccatttatatatgtgtgtccagatattttttatttgggtttgtgactagataagaatcgct 141  Q
    ||||||||| ||||||| || ||||| ||||||||||||||||||||  ||||||| ||| ||||| ||||||| ||||| ||| | | ||||||| |||    
T  7415003 aaaaatgatgtgactaattttttttt-ttttaattctctccatttatgaatgtgtgcccaaatattatttatttcggtttatgattgggtaagaattgct 7415101  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 9380473 - 9380575
Alignment:
Q  18 aagaaaaatttaaagataaatataaaaaatgatatgactaaattatttttctttt---aattctctccatttatatatgtgtgtccagatattttttatt 114  Q
    ||||||||||||||||||||  ||||||||||| ||| ||| || ||||| ||||   |||  | ||||||||| |||||||||||| |||||||| |||    
T  9380473 aagaaaaatttaaagataaaagtaaaaaatgatgtgattaatttttttttttttttataatattttccatttatgtatgtgtgtccaaatatttttgatt 9380572  T
Q  115 tgg 117  Q
    |||    
T  9380573 tgg 9380575  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 7213015 - 7213063
Alignment:
Q  21 aaaaatttaaagataaatataaaaaatgatatgactaaattatttttct 69  Q
    ||||||| |||||||||  ||||||||||||||||||| ||||||||||    
T  7213015 aaaaattaaaagataaaagtaaaaaatgatatgactaatttatttttct 7213063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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